PMC Links for GEO Profiles (Select 39411442) - PMC

Result Filters

Links from GEO Profiles

Items: 13

Select item 113161321.

The temporal dynamics of lncRNA Firre-mediated epigenetic and transcriptional regulation

Christian Much, Erika L. Lasda, Isabela T. Pereira, Tenaya K. Vallery, Daniel Ramirez, Jordan P. Lewandowski, Robin D. Dowell, Michael J. Smallegan, John L. Rinn

Nat Commun. 2024; 15: 6821. Published online 2024 Aug 9. doi: 10.1038/s41467-024-50402-0

PMCID:: PMC11316132

Abstract Article PDF–3.5M

Select item 110612112.

Increased expression of long non-coding RNA FIRRE promotes hepatocellular carcinoma by HuR-CyclinD1 axis signaling

Yuki Haga, Debojyoty Bandyopadhyay, Mousumi Khatun, Ellen Tran, Robert Steele, Sumona Banerjee, Ranjit Ray, Mustafa Nazzal, Ratna B. Ray

J Biol Chem. 2024 May; 300(5): 107247. Published online 2024 Mar 29. doi: 10.1016/j.jbc.2024.107247

PMCID:: PMC11061211

Abstract Article PDF–1.8M

Select item 102809403.

CircNFATC3 promotes the proliferation of gastric cancer through binding to IGF2BP3 and restricting its ubiquitination to enhance CCND1 mRNA stability

Feifei Yang, Qiang Ma, Bo Huang, Xiaolin Wang, Xiaojuan Pan, Ting Yu, Lingyu Ran, Shan Jiang, Haiping Li, Ye Chen, Yuying Liu, Ce Liang, Junwu Ren, Yuying Zhang, Shimin Wang, Wei Li, Bin Xiao

J Transl Med. 2023; 21: 402. Published online 2023 Jun 20. doi: 10.1186/s12967-023-04235-y

PMCID:: PMC10280940

Abstract Article PDF–11M

Select item 88110664.

LncRNA FIRRE functions as a tumor promoter by interaction with PTBP1 to stabilize BECN1 mRNA and facilitate autophagy

Yajie Wang, Zhengyang Li, Shizan Xu, Wenjun Li, Mengyun Chen, Miao Jiang, Xiaoming Fan

Cell Death Dis. 2022 Feb; 13(2): 98. Published online 2022 Feb 2. doi: 10.1038/s41419-022-04509-1

PMCID:: PMC8811066

Abstract Article PDF–5.8M

Select item 59105585.

Analysis of human ES cell differentiation establishes that the dominant isoforms of the lncRNAs RMST and FIRRE are circular

Osagie G. Izuogu, Abd A. Alhasan, Carla Mellough, Joseph Collin, Richard Gallon, Jonathon Hyslop, Francesco K. Mastrorosa, Ingrid Ehrmann, Majlinda Lako, David J. Elliott, Mauro Santibanez-Koref, Michael S. Jackson

BMC Genomics. 2018; 19: 276. Published online 2018 Apr 20. doi: 10.1186/s12864-018-4660-7

PMCID:: PMC5910558

Abstract Article PDF–3.8M

Select item 58991546.

A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus

A. Rasim Barutcu, Philipp G. Maass, Jordan P. Lewandowski, Catherine L. Weiner, John L. Rinn

Nat Commun. 2018; 9: 1444. Published online 2018 Apr 13. doi: 10.1038/s41467-018-03614-0

PMCID:: PMC5899154

Abstract Article PDF–2.4M

Select item 58269267.

VIRMA mediates preferential m⁶A mRNA methylation in 3′UTR and near stop codon and associates with alternative polyadenylation

Yanan Yue, Jun Liu, Xiaolong Cui, Jie Cao, Guanzheng Luo, Zezhou Zhang, Tao Cheng, Minsong Gao, Xiao Shu, Honghui Ma, Fengqin Wang, Xinxia Wang, Bin Shen, Yizhen Wang, Xinhua Feng, Chuan He, Jianzhao Liu

Cell Discov. 2018; 4: 10. Published online 2018 Feb 27. doi: 10.1038/s41421-018-0019-0

PMCID:: PMC5826926

Abstract Article PDF–2.3M

Select item 56728168.

The NF-κB–Responsive Long Noncoding RNA FIRRE Regulates Posttranscriptional Regulation of Inflammatory Gene Expression through Interacting with hnRNPU

Yajing Lu, Xu Liu, Minghong Xie, Mingjia Liu, Mengling Ye, Mingxuan Li, Xian-Ming Chen, Xiaoqing Li, Rui Zhou

J Immunol. 2017 Nov 15; 199(10): 3571–3582. Published online 2017 Oct 9. doi: 10.4049/jimmunol.1700091

PMCID:: PMC5672816

Abstract Article PDF–1.5M

Select item 48208089.

Function and evolution of local repeats in the Firre locus

Ezgi Hacisuleyman, Chinmay J. Shukla, Catherine L. Weiner, John L. Rinn

Nat Commun. 2016; 7: 11021. Published online 2016 Mar 24. doi: 10.1038/ncomms11021

PMCID:: PMC4820808

Abstract Article PDF–1.0M

Select item 462686810.

Regulatory networks of non-coding RNAs in brown/beige adipogenesis

Shaohai Xu, Peng Chen, Lei Sun

Biosci Rep. 2015 Oct; 35(5): e00262. Prepublished online 2015 Aug 17. Published online 2015 Oct 30. doi: 10.1042/BSR20150155

PMCID:: PMC4626868

Abstract Article PDF–935K

Select item 439173011.

The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation

Fan Yang, Xinxian Deng, Wenxiu Ma, Joel B Berletch, Natalia Rabaia, Gengze Wei, James M Moore, Galina N Filippova, Jun Xu, Yajuan Liu, William S Noble, Jay Shendure, Christine M Disteche

Genome Biol. 2015; 16(1): 52. Published online 2015 Mar 12. doi: 10.1186/s13059-015-0618-0

PMCID:: PMC4391730

Abstract Article PDF–1.7M

Select item 395033312.

Topological Organization of Multi-chromosomal Regions by Firre

Ezgi Hacisuleyman, Loyal A. Goff, Cole Trapnell, Adam Williams, Jorge Henao-Mejia, Lei Sun, Patrick McClanahan, David G. Hendrickson, Martin Sauvageau, David R. Kelley, Michael Morse, Jesse Engreitz, Eric S. Lander, Mitch Guttman, Harvey F. Lodish, Richard Flavell, Arjun Raj, John L. Rinn

Nat Struct Mol Biol. Author manuscript; available in PMC 2014 Aug 1.

Published in final edited form as: Nat Struct Mol Biol. 2014 Feb; 21(2): 198–206. Published online 2014 Jan 26. doi: 10.1038/nsmb.2764