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Select item 105152711.

A bioinformatics screen reveals hox and chromatin remodeling factors at the Drosophila histone locus

Lauren J. Hodkinson, Connor Smith, H. Skye Comstra, Bukola A. Ajani, Eric H. Albanese, Kawsar Arsalan, Alvaro Perez Daisson, Katherine B. Forrest, Elijah H. Fox, Matthew R. Guerette, Samia Khan, Madeleine P. Koenig, Shivani Lam, Ava S. Lewandowski, Lauren J. Mahoney, Nasserallah Manai, JonCarlo Miglay, Blake A. Miller, Olivia Milloway, Nhi Ngo, Vu D. Ngo, Nicole F. Oey, Tanya A. Punjani, HaoMin SiMa, Hollis Zeng, Casey A. Schmidt, Leila E. Rieder

BMC Genom Data. 2023; 24: 54. Published online 2023 Sep 21. doi: 10.1186/s12863-023-01147-0

PMCID:: PMC10515271

Abstract Article PDF–7.4M

Select item 101057362.

Next-generation large-scale binary protein interaction network for Drosophila melanogaster

Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr

Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0

PMCID:: PMC10105736

Abstract Article PDF–3.2M

Select item 85828303.

Pilot RNAi Screen in Drosophila Neural Stem Cell Lineages to Identify Novel Tumor Suppressor Genes Involved in Asymmetric Cell Division

Sandra Manzanero-Ortiz, Ana de Torres-Jurado, Rubí Hernández-Rojas, Ana Carmena

Int J Mol Sci. 2021 Nov; 22(21): 11332. Published online 2021 Oct 20. doi: 10.3390/ijms222111332

PMCID:: PMC8582830

Abstract Article PDF–5.8M

Select item 83870264.

Extremely rapid and reversible optogenetic perturbation of nuclear proteins in living embryos

Anna C. Kögler, Yacine Kherdjemil, Katharina Bender, Adam Rabinowitz, Raquel Marco-Ferreres, Eileen E.M. Furlong

Dev Cell. 2021 Aug 23; 56(16): 2348–2363.e8. doi: 10.1016/j.devcel.2021.07.011

PMCID:: PMC8387026

Abstract Article

Select item 76724715.

Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein–DNA complexes

Naomi Yamada, Matthew J Rossi, Nina Farrell, B Franklin Pugh, Shaun Mahony

Nucleic Acids Res. 2020 Nov 18; 48(20): 11215–11226. Published online 2020 Aug 4. doi: 10.1093/nar/gkaa618

PMCID:: PMC7672471

Abstract Article PDF–4.0M

Select item 76598906.

Gene Specific Transcriptional Mechanisms at The Histone Gene Cluster Revealed by Single Cell Imaging

Benjamin Guglielmi, Natalie La Rochelle, Robert Tjian

Mol Cell. Author manuscript; available in PMC 2020 Nov 12.

Published in final edited form as: Mol Cell. 2013 Aug 22; 51(4): 480–492. doi: 10.1016/j.molcel.2013.08.009

PMCID:: PMC7659890

Abstract Article PDF–1.4M

Select item 69615787.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 65040038.

Distinct gene-selective roles for a network of core promoter factors in Drosophila neural stem cell identity

Alexandre Neves, Robert N. Eisenman

Biol Open. 2019 Apr 15; 8(4): bio042168. Published online 2019 Apr 15. doi: 10.1242/bio.042168

PMCID:: PMC6504003

Abstract Article PDF–4.4M

Select item 64995259.

The RNA Polymerase II Core Promoter in Drosophila

Long Vo Ngoc, George A. Kassavetis, James T. Kadonaga

Genetics. 2019 May; 212(1): 13–24. Published online 2019 Mar 6. doi: 10.1534/genetics.119.302021

PMCID:: PMC6499525

Abstract Article PDF–866K

Select item 582654410.

CBP regulates recruitment and release of promoter-proximal RNA polymerase II

Ann Boija, Dig Bijay Mahat, Aman Zare, Per-Henrik Holmqvist, Philge Philip, David J. Meyers, Philip A. Cole, John T. Lis, Per Stenberg, Mattias Mannervik

Mol Cell. Author manuscript; available in PMC 2018 Nov 2.

Published in final edited form as: Mol Cell. 2017 Nov 2; 68(3): 491–503.e5. Published online 2017 Oct 19. doi: 10.1016/j.molcel.2017.09.031

PMCID:: PMC5826544

Abstract Article PDF–2.0M

Select item 570780511.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900212.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 478811613.

Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet

Ibrahim Ömer Çiçek, Samir Karaca, Marko Brankatschk, Suzanne Eaton, Henning Urlaub, Halyna R. Shcherbata

Genetics. 2016 Mar; 202(3): 1167–1183. Published online 2016 Jan 22. doi: 10.1534/genetics.115.185371

PMCID:: PMC4788116

Abstract Article PDF–4.7M

Select item 476031114.

Transcriptomes of lineage-specific Drosophila neuroblasts profiled by genetic targeting and robotic sorting

Ching-Po Yang, Chi-Cheng Fu, Ken Sugino, Zhiyong Liu, Qingzhong Ren, Ling-Yu Liu, Xiaohao Yao, Luke P. Lee, Tzumin Lee

Development. 2016 Feb 1; 143(3): 411–421. doi: 10.1242/dev.129163

PMCID:: PMC4760311

Abstract Article

Select item 473800515.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

Select item 461958116.

A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction

Prabhat Tiwari, Arun Kumar, Rudra Nayan Das, Vivek Malhotra, K. VijayRaghavan

PLoS One. 2015; 10(10): e0140976. Published online 2015 Oct 21. doi: 10.1371/journal.pone.0140976

PMCID:: PMC4619581

Abstract Article PDF–12M

Select item 452833017.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832918.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 440366719.

Transcription Factor Networks in Drosophila melanogaster

David Y. Rhee, Dong-Yeon Cho, Bo Zhai, Matthew Slattery, Lijia Ma, Julian Mintseris, Christina Y. Wong, Kevin P. White, Susan E. Celniker, Teresa M. Przytycka, Steven P. Gygi, Robert A. Obar, Spyros Artavanis-Tsakonas

Cell Rep. Author manuscript; available in PMC 2015 Apr 20.

Published in final edited form as: Cell Rep. 2014 Sep 25; 8(6): 2031–2043. Published online 2014 Sep 18. doi: 10.1016/j.celrep.2014.08.038

PMCID:: PMC4403667

Abstract Article PDF–1.3M

Select item 439283420.

Inhibitory activities of short linear motifs underlie Hox interactome specificity in vivo

Manon Baëza, Séverine Viala, Marjorie Heim, Amélie Dard, Bruno Hudry, Marilyne Duffraisse, Ana Rogulja-Ortmann, Christine Brun, Samir Merabet

eLife. 2015; 4: e06034. Published online 2015 Apr 14. doi: 10.7554/eLife.06034

PMCID:: PMC4392834

Abstract Article PDF–7.1M

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