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Items: 1 to 20 of 23

1.
Functional genomic landscape of cancer-intrinsic evasion of killing by T cells
Keith A. Lawson, Cristovão M. Sousa, Xiaoyu Zhang, Eiru Kim, Rummy Akthar, Joseph J. Caumanns, Yuxi Yao, Nicholas Mikolajewicz, Catherine Ross, Kevin R. Brown, Abdelrahman Abou Zid, Zi Peng Fan, Shirley Hui, Jordan A. Krall, Donald M. Simons, Chloe J. Slater, Victor De Jesus, Lujia Tang, Richa Singh, Joshua E. Goldford, Sarah Martin, Qian Huang, Elizabeth A. Francis, Andrea Habsid, Ryan Climie, David Tieu, Jiarun Wei, Ren Li, Amy Hin Yan Tong, Michael Aregger, Katherine S. Chan, Hong Han, Xiaowei Wang, Patricia Mero, John H. Brumell, Antonio Finelli, Laurie Ailles, Gary Bader, Gromoslaw A. Smolen, Gillian A. Kingsbury, Traver Hart, Charles Kung, Jason Moffat
Nature. Author manuscript; available in PMC 2022 Apr 18.
Published in final edited form as: Nature. 2020 Oct; 586(7827): 120–126. Published online 2020 Sep 23. doi: 10.1038/s41586-020-2746-2
PMCID:
PMC9014559
AbstractArticlePDF–6.6M
2.
ZFP628 Is a TAF4b-Interacting Transcription Factor Required for Mouse Spermiogenesis
Eric A. Gustafson, Kimberly A. Seymour, Kirsten Sigrist, Dirk G. D. E. Rooij, Richard N. Freiman
Mol Cell Biol. 2020 Apr; 40(7): e00228-19. Prepublished online 2020 Jan 13. Published online 2020 Mar 16. doi: 10.1128/MCB.00228-19
PMCID:
PMC7076252
AbstractArticlePDF–5.8M
3.
Irisin Mediates Effects on Bone and Fat via αV Integrin Receptors
Hyeonwoo Kim, Christiane D. Wrann, Mark Jedrychowski, Sara Vidoni, Yukiko Kitase, Kenichi Nagano, Chenhe Zhou, Joshua Chou, Virginia-Jeni A. Parkman, Scott J. Novick, Timothy S. Strutzenberg, Bruce D. Pascal, Phuong T. Le, Daniel J. Brooks, Alexander M. Roche, Kaitlyn K. Gerber, Laura Mattheis, Wenjing Chen, Hua Tu, Mary L. Bouxsein, Patrick R. Griffin, Roland Baron, Clifford J. Rosen, Lynda F. Bonewald, Bruce M. Spiegelman
Cell. Author manuscript; available in PMC 2019 Dec 13.
Published in final edited form as: Cell. 2018 Dec 13; 175(7): 1756–1768.e17. doi: 10.1016/j.cell.2018.10.025
Correction in:
Cell. 2019 Jul 11; 178(2): 507–508.
PMCID:
PMC6298040
AbstractArticlePDF–1.2M
4.
The identification and characterization of a testis-specific cDNA during spermatogenesis
Ying Chen, Jiarui Hu, Ping Song, Wuming Gong
Cell Mol Biol Lett. 2006 Mar; 11(1): 80–89. Published online 2006 Mar 1. doi: 10.2478/s11658-006-0008-4
PMCID:
PMC6275928
SummaryPDF–970K
5.
TRF2 is recruited to the pre-initiation complex as a testis-specific subunit of TFIIA/ALF to promote haploid cell gene expression
Igor Martianov, Amandine Velt, Guillaume Davidson, Mohamed-Amin Choukrallah, Irwin Davidson
Sci Rep. 2016; 6: 32069. Published online 2016 Aug 31. doi: 10.1038/srep32069
PMCID:
PMC5006001
AbstractArticlePDF–1.7M
6.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
7.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
8.
A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58
Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara
Dev Cell. Author manuscript; available in PMC 2011 Jun 7.
Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011
PMCID:
PMC3110151
AbstractArticlePDF–2.0M
9.
TDRD5 is required for retrotransposon silencing, chromatoid body assembly, and spermiogenesis in mice
Yukihiro Yabuta, Hiroshi Ohta, Takaya Abe, Kazuki Kurimoto, Shinichiro Chuma, Mitinori Saitou
J Cell Biol. 2011 Mar 7; 192(5): 781–795. doi: 10.1083/jcb.201009043
PMCID:
PMC3051809
AbstractArticlePDF–4.0M
10.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
11.
An atlas of combinatorial transcriptional regulation in mouse and man
The FANTOM consortium and RIKEN Omics Science Center
Cell. Author manuscript; available in PMC 2011 Mar 5.
Published in final edited form as: Cell. 2010 Mar 5; 140(5): 744–752. doi: 10.1016/j.cell.2010.01.044
Correction in:
volume 141 on page 369
PMCID:
PMC2836267
AbstractArticlePDF–2.2M
12.
A Genome-Wide Screen for Spatially Restricted Expression Patterns Identifies Transcription Factors That Regulate Glial Development
Hui Fu, Jun Cai, Hans Clevers, Eva Fast, Susan Gray, Rachel Greenberg, Mukesh K. Jain, Qiufu Ma, Mengsheng Qiu, David H. Rowitch, Christopher M. Taylor, Charles D. Stiles
J Neurosci. 2009 Sep 9; 29(36): 11399–11408. doi: 10.1523/JNEUROSCI.0160-09.2009
PMCID:
PMC2775518
AbstractArticlePDF–2.5M
13.
Moderate expression of TRF2 in the hematopoietic system increases development of large cell blastic T-cell lymphomas
Sebastian Begemann, Francesco Galimi, Jan Karlseder
Aging (Albany NY) 2009 Jan; 1(1): 122–130. Published online 2009 Jan 21. doi: 10.18632/aging.100015
PMCID:
PMC2772070
AbstractArticlePDF–572K
14.
TIPT2 and geminin interact with basal transcription factors to synergize in transcriptional regulation
Mara E Pitulescu, Martin Teichmann, Lingfei Luo, Michael Kessel
BMC Biochem. 2009; 10: 16. Published online 2009 Jun 10. doi: 10.1186/1471-2091-10-16
PMCID:
PMC2702275
AbstractArticlePDF–2.7M
15.
No Overt Nucleosome Eviction at Deprotected Telomeres
Peng Wu, Titia de Lange
Mol Cell Biol. 2008 Sep; 28(18): 5724–5735. Published online 2008 Jul 14. doi: 10.1128/MCB.01764-07
PMCID:
PMC2546919
AbstractArticlePDF–1.2M
16.
Telomerase abrogation dramatically accelerates TRF2-induced epithelial carcinogenesis
Raquel Blanco, Purificación Muñoz, Juana M. Flores, Peter Klatt, María A. Blasco
Genes Dev. 2007 Jan 15; 21(2): 206–220. doi: 10.1101/gad.406207
PMCID:
PMC1770903
AbstractArticlePDF–1.3M
17.
BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System
Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran
PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086
PMCID:
PMC1413568
ArticlePDF–99K
18.
Infertility with Defective Spermiogenesis in Mice Lacking AF5q31, the Target of Chromosomal Translocation in Human Infant Leukemia
Atsushi Urano, Masaki Endoh, Tadashi Wada, Yoshihiro Morikawa, Miyuki Itoh, Yuki Kataoka, Tomohiko Taki, Hiroshi Akazawa, Hideaki Nakajima, Issei Komuro, Nobuaki Yoshida, Yasuhide Hayashi, Hiroshi Handa, Toshio Kitamura, Tetsuya Nosaka
Mol Cell Biol. 2005 Aug; 25(15): 6834–6845. doi: 10.1128/MCB.25.15.6834-6845.2005
PMCID:
PMC1190320
AbstractArticlePDF–1.7M
19.
TATA-Binding Protein (TBP)-Like Factor (TLF) Is a Functional Regulator of Transcription: Reciprocal Regulation of the Neurofibromatosis Type 1 and c-fos Genes by TLF/TRF2 and TBP
Jayhong A. Chong, Magdalene M. Moran, Martin Teichmann, J. Stefan Kaczmarek, Robert Roeder, David E. Clapham
Mol Cell Biol. 2005 Apr; 25(7): 2632–2643. doi: 10.1128/MCB.25.7.2632-2643.2005
PMCID:
PMC1061635
AbstractArticlePDF–730K
20.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M

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