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Items: 1 to 20 of 51

1.
A global genetic interaction network by single-cell imaging and machine learning
Florian Heigwer, Christian Scheeder, Josephine Bageritz, Schayan Yousefian, Benedikt Rauscher, Christina Laufer, Sergi Beneyto-Calabuig, Maja Christina Funk, Vera Peters, Maria Boulougouri, Jana Bilanovic, Thilo Miersch, Barbara Schmitt, Claudia Blass, Fillip Port, Michael Boutros
Cell Syst. 2023 May 17; 14(5): 346–362.e6. doi: 10.1016/j.cels.2023.03.003
PMCID:
PMC10206407
AbstractArticle
2.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
3.
Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo
Wessel van Leeuwen, Michael VanInsberghe, Nico Battich, Fredrik Salmén, Alexander van Oudenaarden, Catherine Rabouille
Cell Rep Methods. 2022 Jun 20; 2(6): 100235. Published online 2022 Jun 20. doi: 10.1016/j.crmeth.2022.100235
PMCID:
PMC9243631
AbstractArticlePDF–5.5M
4.
Large‐scale analysis of Drosophila core promoter function using synthetic promoters
Zhan Qi, Christophe Jung, Peter Bandilla, Claudia Ludwig, Mark Heron, Anja Sophie Kiesel, Mariam Museridze, Julia Philippou‐Massier, Miroslav Nikolov, Alessio Renna Max Schnepf, Ulrich Unnerstall, Stefano Ceolin, Bettina Mühlig, Nicolas Gompel, Johannes Soeding, Ulrike Gaul
Mol Syst Biol. 2022 Feb; 18(2): e9816. Published online 2022 Feb 14. doi: 10.15252/msb.20209816
PMCID:
PMC8842121
AbstractArticlePDF–3.7M
5.
Polyploidy in the adult Drosophila brain
Shyama Nandakumar, Olga Grushko, Laura A Buttitta
eLife. 2020; 9: e54385. Published online 2020 Aug 25. doi: 10.7554/eLife.54385
PMCID:
PMC7447450
AbstractArticlePDF–4.1M
6.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
7.
Identification of novel genes associated with longevity in Drosophila melanogaster - a computational approach
Bethany S. Hall, Yvonne A. Barnett, Jonathan J. Crofts, Nadia Chuzhanova
Aging (Albany NY) 2019 Dec 15; 11(23): 11244–11267. Published online 2019 Dec 3. doi: 10.18632/aging.102527
PMCID:
PMC6932890
AbstractArticlePDF–1.2M
8.
Unbiased Boolean analysis of public gene expression data for cell cycle gene identification
Sarah A. Dabydeen, Arshad Desai, Debashis Sahoo
Mol Biol Cell. 2019 Jul 1; 30(14): 1770–1779. doi: 10.1091/mbc.E19-01-0013
PMCID:
PMC6727750
AbstractArticlePDF–5.4M
9.
Time-resolved mapping of genetic interactions to model rewiring of signaling pathways
Florian Heigwer, Christian Scheeder, Thilo Miersch, Barbara Schmitt, Claudia Blass, Mischan Vali Pour Jamnani, Michael Boutros
eLife. 2018; 7: e40174. Published online 2018 Dec 28. doi: 10.7554/eLife.40174
PMCID:
PMC6319608
AbstractArticlePDF–3.4M
10.
Rif1 prolongs the embryonic S phase at the Drosophila mid-blastula transition
Charles A. Seller, Patrick H. O’Farrell
PLoS Biol. 2018 May; 16(5): e2005687. Published online 2018 May 10. doi: 10.1371/journal.pbio.2005687
PMCID:
PMC5963817
AbstractArticlePDF–29M
11.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
12.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
13.
EGFR-dependent TOR-independent endocycles support Drosophila gut epithelial regeneration
Jinyi Xiang, Jennifer Bandura, Peng Zhang, Yinhua Jin, Hanna Reuter, Bruce A. Edgar
Nat Commun. 2017; 8: 15125. Published online 2017 May 9. doi: 10.1038/ncomms15125
PMCID:
PMC5436070
AbstractArticlePDF–3.7M
14.
Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes
Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili
Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062
PMCID:
PMC4738005
AbstractArticlePDF–205K
15.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
16.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
17.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
18.
CoinFLP: a system for efficient mosaic screening and for visualizing clonal boundaries in Drosophila
Justin A. Bosch, Ngoc Han Tran, Iswar K. Hariharan
Development. 2015 Feb 1; 142(3): 597–606. doi: 10.1242/dev.114603
PMCID:
PMC4302991
AbstractArticle
19.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
20.
Screen for mitochondrial DNA copy number maintenance genes reveals essential role for ATP synthase
Atsushi Fukuoh, Giuseppe Cannino, Mike Gerards, Suzanne Buckley, Selena Kazancioglu, Filippo Scialo, Eero Lihavainen, Andre Ribeiro, Eric Dufour, Howard T Jacobs
Mol Syst Biol. 2014 Jun 25; 10(6): 734. Published online 2014 Jul 1. doi: 10.15252/msb.20145117
PMCID:
PMC4265055
AbstractArticlePDF–1.4M

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