PMC Links for GEO Profiles (Select 37729990) - PMC

Select item 103359371.

Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis

Abhishek Sampath Kumar, Luyi Tian, Adriano Bolondi, Amèlia Aragonés Hernández, Robert Stickels, Helene Kretzmer, Evan Murray, Lars Wittler, Maria Walther, Gabriel Barakat, Leah Haut, Yechiel Elkabetz, Evan Z. Macosko, Léo Guignard, Fei Chen, Alexander Meissner

Nat Genet. 2023; 55(7): 1176–1185. Published online 2023 Jul 6. doi: 10.1038/s41588-023-01435-6

PMCID:: PMC10335937

Abstract Article PDF–25M

Select item 92829302.

Human midbrain dopaminergic neuronal differentiation markers predict cell therapy outcomes in a Parkinson’s disease model

Peibo Xu, Hui He, Qinqin Gao, Yingying Zhou, Ziyan Wu, Xiao Zhang, Linyu Sun, Gang Hu, Qian Guan, Zhiwen You, Xinyue Zhang, Wenping Zheng, Man Xiong, Yuejun Chen

J Clin Invest. 2022 Jul 15; 132(14): e156768. Published online 2022 Jul 15. doi: 10.1172/JCI156768

PMCID:: PMC9282930

Abstract Article PDF–19M

Select item 86580403.

Nkx2.9 Contributes to Mid-Hindbrain Patterning by Regulation of mdDA Neuronal Cell-Fate and Repression of a Hindbrain-Specific Cell-Fate

Willemieke M. Kouwenhoven, Lars von Oerthel, Maria Gruppilo, Jianmin Tian, Cindy M. R. J. Wagemans, Imke G. J. Houwers, Joseph Locker, Simone Mesman, Marten P. Smidt

Int J Mol Sci. 2021 Dec; 22(23): 12663. Published online 2021 Nov 23. doi: 10.3390/ijms222312663

PMCID:: PMC8658040

Abstract Article PDF–7.2M

Select item 76457154.

FKBP8 variants are risk factors for spina bifida

Tian Tian, Xuanye Cao, Sung-Eun Kim, Ying Linda Lin, John W Steele, Robert M Cabrera, Menuka Karki, Wei Yang, Nicholas J Marini, Ethan N Hoffman, Xiao Han, Cindy Hu, Linlin Wang, Bogdan J Wlodarczyk, Gary M Shaw, Aiguo Ren, Richard H Finnell, Yunping Lei

Hum Mol Genet. 2020 Sep 15; 29(18): 3132–3144. Published online 2020 Sep 24. doi: 10.1093/hmg/ddaa211

PMCID:: PMC7645715

Abstract Article PDF–1.4M

Select item 74943415.

A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells

José M. Dias, Zhanna Alekseenko, Ashwini Jeggari, Marcelo Boareto, Jannik Vollmer, Mariya Kozhevnikova, Hui Wang, Michael P. Matise, Andrey Alexeyenko, Dagmar Iber, Johan Ericson

Sci Adv. 2020 Sep; 6(38): eaba8196. Published online 2020 Sep 16. doi: 10.1126/sciadv.aba8196

PMCID:: PMC7494341

Abstract Article PDF–9.5M

Select item 67257936.

Molecular Control of Spinal Accessory Motor Neuron/Axon Development in the Mouse Spinal Cord

Allison K. Dillon, Shinobu C. Fujita, Michael P. Matise, Andrew A. Jarjour, Timothy E. Kennedy, Heike Kollmus, Hans-Henning Arnold, Joshua A. Weiner, Joshua R. Sanes, Zaven Kaprielian

J Neurosci. 2005 Nov 2; 25(44): 10119–10130. doi: 10.1523/JNEUROSCI.3455-05.2005

PMCID:: PMC6725793

Abstract Article PDF–727K

Select item 63813177.

Genome-wide chromatin accessibility and transcriptome profiling show minimal epigenome changes and coordinated transcriptional dysregulation of hedgehog signaling in Danforth’s short tail mice

Peter Orchard, James S White, Peedikayil E Thomas, Anna Mychalowych, Anya Kiseleva, John Hensley, Benjamin Allen, Stephen C J Parker, Catherine E Keegan

Hum Mol Genet. 2019 Mar 1; 28(5): 736–750. Published online 2018 Oct 31. doi: 10.1093/hmg/ddy378

PMCID:: PMC6381317

Abstract Article PDF–63M

Select item 53904588.

Transcriptome profiling reveals expression signatures of cranial neural crest cells arising from different axial levels

Rachael Lumb, Sam Buckberry, Genevieve Secker, David Lawrence, Quenten Schwarz

BMC Dev Biol. 2017; 17: 5. Published online 2017 Apr 13. doi: 10.1186/s12861-017-0147-z

PMCID:: PMC5390458

Abstract Article PDF–1.5M

Select item 44127159.

Nkx2.2 and Nkx2.9 Are the Key Regulators to Determine Cell Fate of Branchial and Visceral Motor Neurons in Caudal Hindbrain

Wassan Jarrar, Jose M. Dias, Johan Ericson, Hans-Henning Arnold, Andreas Holz

PLoS One. 2015; 10(4): e0124408. Published online 2015 Apr 28. doi: 10.1371/journal.pone.0124408

PMCID:: PMC4412715

Abstract Article PDF–41M

Select item 352917310.

A genome-scale study of transcription factor expression in the branching mouse lung

John C. Herriges, Lan Yi, Elizabeth A. Hines, Julie F. Harvey, Guoliang Xu, Paul Gray, Qiufu Ma, Xin Sun

Dev Dyn. Author manuscript; available in PMC 2013 Sep 1.

Published in final edited form as: Dev Dyn. 2012 Sep; 241(9): 1432–1453. Published online 2012 Jul 20. doi: 10.1002/dvdy.23823

PMCID:: PMC3529173

Abstract Article PDF–1.5M

Select item 330817811.

Motor axon exit from the mammalian spinal cord is controlled by the homeodomain protein Nkx2.9 via Robo-Slit signaling

Arlene Bravo-Ambrosio, Grant Mastick, Zaven Kaprielian

Development. 2012 Apr 15; 139(8): 1435–1446. doi: 10.1242/dev.072256

PMCID:: PMC3308178

Abstract Article

Select item 317805912.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253413.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582