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Select item 95556381.

Parafibromin governs cell polarity and centrosome assembly in Drosophila neural stem cells

Qiannan Deng, Cheng Wang, Chwee Tat Koe, Jan Peter Heinen, Ye Sing Tan, Song Li, Cayetano Gonzalez, Wing-Kin Sung, Hongyan Wang

PLoS Biol. 2022 Oct; 20(10): e3001834. Published online 2022 Oct 12. doi: 10.1371/journal.pbio.3001834

PMCID:: PMC9555638

Abstract Article PDF–5.4M

Select item 92046032.

In Depth Exploration of the Alternative Proteome of Drosophila melanogaster

Bertrand Fabre, Sebastien A. Choteau, Carine Duboé, Carole Pichereaux, Audrey Montigny, Dagmara Korona, Michael J. Deery, Mylène Camus, Christine Brun, Odile Burlet-Schiltz, Steven Russell, Jean-Philippe Combier, Kathryn S. Lilley, Serge Plaza

Front Cell Dev Biol. 2022; 10: 901351. Published online 2022 May 26. doi: 10.3389/fcell.2022.901351

PMCID:: PMC9204603

Abstract Article PDF–2.1M

Select item 69615783.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 65351284.

Toxic expanded GGGGCC repeat transcription is mediated by the PAF1 complex in C9orf72-associated FTD.

Lindsey D. Goodman, Mercedes Prudencio, Nicholas J. Kramer, Luis F. Martinez-Ramirez, Ananth R. Srinivasan, Matthews Lan, Michael J. Parisi, Yongqing Zhu, Jeannie Chew, Casey N. Cook, Amit Berson, Aaron D. Gitler, Leonard Petrucelli, Nancy M. Bonini

Nat Neurosci. Author manuscript; available in PMC 2019 Nov 20.

Published in final edited form as: Nat Neurosci. 2019 Jun; 22(6): 863–874. Published online 2019 May 20. doi: 10.1038/s41593-019-0396-1

Correction in:: Nat Neurosci. 2023 Feb 21

PMCID:: PMC6535128

Abstract Article PDF–3.4M

Select item 57078055.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890026.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 56768857.

PAF1 complex component Leo1 helps recruit Drosophila Myc to promoters

Jennifer M. Gerlach, Michael Furrer, Maria Gallant, Dirk Birkel, Apoorva Baluapuri, Elmar Wolf, Peter Gallant

Proc Natl Acad Sci U S A. 2017 Oct 31; 114(44): E9224–E9232. Published online 2017 Oct 16. doi: 10.1073/pnas.1705816114

PMCID:: PMC5676885

Abstract Article PDF–1.4M

Select item 51449568.

Drosophila CG2469 Encodes a Homolog of Human CTR9 and Is Essential for Development

Dhananjay Chaturvedi, Mayu Inaba, Shane Scoggin, Michael Buszczak

G3 (Bethesda) 2016 Dec; 6(12): 3849–3857. Published online 2016 Sep 27. doi: 10.1534/g3.116.035196

PMCID:: PMC5144956

Abstract Article PDF–2.3M

Select item 50689449.

Ctr9, a Key Component of the Paf1 Complex, Affects Proliferation and Terminal Differentiation in the Developing Drosophila Nervous System

Shahrzad Bahrampour, Stefan Thor

G3 (Bethesda) 2016 Oct; 6(10): 3229–3239. Published online 2016 Aug 11. doi: 10.1534/g3.116.034231

PMCID:: PMC5068944

Abstract Article PDF–2.2M

Select item 473800510.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

Select item 459309311.

Proteomic mapping in live Drosophila tissues using an engineered ascorbate peroxidase

Chiao-Lin Chen, Yanhui Hu, Namrata D. Udeshi, Thomas Y. Lau, Frederik Wirtz-Peitz, Li He, Alice Y. Ting, Steven A. Carr, Norbert Perrimon

Proc Natl Acad Sci U S A. 2015 Sep 29; 112(39): 12093–12098. Published online 2015 Sep 11. doi: 10.1073/pnas.1515623112

PMCID:: PMC4593093

Abstract Article PDF–1.4M

Select item 457423412.

Novel Genes Involved in Controlling Specification of Drosophila FMRFamide Neuropeptide Cells

Caroline Bivik, Shahrzad Bahrampour, Carina Ulvklo, Patrik Nilsson, Anna Angel, Fredrik Fransson, Erika Lundin, Jakob Renhorn, Stefan Thor

Genetics. 2015 Aug; 200(4): 1229–1244. Published online 2015 Jun 18. doi: 10.1534/genetics.115.178483

PMCID:: PMC4574234

Abstract Article PDF–2.7M

Select item 452833013.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832914.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288715.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 427152716.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

Select item 419771017.

Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library

Nick Lowe, Johanna S. Rees, John Roote, Ed Ryder, Irina M. Armean, Glynnis Johnson, Emma Drummond, Helen Spriggs, Jenny Drummond, Jose P. Magbanua, Huw Naylor, Bénédicte Sanson, Rebecca Bastock, Sven Huelsmann, Vitor Trovisco, Matthias Landgraf, Seymour Knowles-Barley, J. Douglas Armstrong, Helen White-Cooper, Celia Hansen, Roger G. Phillips, The UK Drosophila Protein Trap Screening Consortium, Kathryn S. Lilley, Steven Russell, Daniel St Johnston

Development. 2014 Oct; 141(20): 3994–4005. doi: 10.1242/dev.111054