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Select item 105234881.

BRWD3 promotes KDM5 degradation to maintain H3K4 methylation levels

Dongsheng Han, Samantha H. Schaffner, Jonathan P. Davies, Mary Lauren Benton, Lars Plate, Jared T. Nordman

Proc Natl Acad Sci U S A. 2023 Sep 26; 120(39): e2305092120. Published online 2023 Sep 18. doi: 10.1073/pnas.2305092120

PMCID:: PMC10523488

Abstract Article PDF–4.4M

Select item 104844492.

TFOFinder: Python program for identifying purine-only double-stranded stretches in the predicted secondary structure(s) of RNA targets

Atara Neugroschl, Irina E. Catrina

PLoS Comput Biol. 2023 Aug; 19(8): e1011418. Published online 2023 Aug 25. doi: 10.1371/journal.pcbi.1011418

PMCID:: PMC10484449

Abstract Article PDF–3.1M

Select item 95024923.

Death of a Protein: The Role of E3 Ubiquitin Ligases in Circadian Rhythms of Mice and Flies

Osama Hasan Mustafa Hasan Abdalla, Brittany Mascarenhas, Hai-Ying Mary Cheng

Int J Mol Sci. 2022 Sep; 23(18): 10569. Published online 2022 Sep 12. doi: 10.3390/ijms231810569

PMCID:: PMC9502492

Abstract Article PDF–13M

Select item 90506444.

Identification of replication fork-associated proteins in Drosophila embryos and cultured cells using iPOND coupled to quantitative mass spectrometry

Alexander Munden, Madison T. Wright, Dongsheng Han, Reyhaneh Tirgar, Lars Plate, Jared T. Nordman

Sci Rep. 2022; 12: 6903. Published online 2022 Apr 28. doi: 10.1038/s41598-022-10821-9

PMCID:: PMC9050644

Abstract Article PDF–2.4M

Select item 86644865.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 80422706.

Comprehensive Identification and Alternative Splicing of Microexons in Drosophila

Ting-Lin Pang, Zhan Ding, Shao-Bo Liang, Liang Li, Bei Zhang, Yu Zhang, Yu-Jie Fan, Yong-Zhen Xu

Front Genet. 2021; 12: 642602. Published online 2021 Mar 30. doi: 10.3389/fgene.2021.642602

PMCID:: PMC8042270

Abstract Article PDF–3.6M

Select item 73282577.

Drosophila Cryptochrome: Variations in Blue.

Lauren Foley, Patrick Emery

J Biol Rhythms. Author manuscript; available in PMC 2020 Jul 1.

Published in final edited form as: J Biol Rhythms. 2020 Feb; 35(1): 16–27. Published online 2019 Oct 10. doi: 10.1177/0748730419878290

PMCID:: PMC7328257

Abstract Article PDF–662K

Select item 70663268.

One Actor, Multiple Roles: The Performances of Cryptochrome in Drosophila

Milena Damulewicz, Gabriella M. Mazzotta

Front Physiol. 2020; 11: 99. Published online 2020 Mar 5. doi: 10.3389/fphys.2020.00099

Correction in:: Front Physiol. 2020; 11: 841.

PMCID:: PMC7066326

Abstract Article PDF–1.5M

Select item 69615789.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 611830710.

Maternal Proteins That Are Phosphoregulated upon Egg Activation Include Crucial Factors for Oogenesis, Egg Activation and Embryogenesis in Drosophila melanogaster

Zijing Zhang, Amber R. Krauchunas, Stephanie Huang, Mariana F. Wolfner

G3 (Bethesda) 2018 Sep; 8(9): 3005–3018. Published online 2018 Jul 16. doi: 10.1534/g3.118.200578

PMCID:: PMC6118307

Abstract Article PDF–1.5M

Select item 589891211.

A gene-specific T2A-GAL4 library for Drosophila

Pei-Tseng Lee, Jonathan Zirin, Oguz Kanca, Wen-Wen Lin, Karen L Schulze, David Li-Kroeger, Rong Tao, Colby Devereaux, Yanhui Hu, Verena Chung, Ying Fang, Yuchun He, Hongling Pan, Ming Ge, Zhongyuan Zuo, Benjamin E Housden, Stephanie E Mohr, Shinya Yamamoto, Robert W Levis, Allan C Spradling, Norbert Perrimon, Hugo J Bellen

eLife. 2018; 7: e35574. Published online 2018 Mar 22. doi: 10.7554/eLife.35574

PMCID:: PMC5898912

Abstract Article PDF–4.9M

Select item 571014412.

A cryptic Tudor domain links BRWD2/PHIP to COMPASS-mediated histone H3K4 methylation

Marc A.J. Morgan, Ryan A. Rickels, Clayton K. Collings, Xiaolin He, Kaixiang Cao, Hans-Martin Herz, Kira A. Cozzolino, Nebiyu A. Abshiru, Stacy A. Marshall, Emily J. Rendleman, Christie C. Sze, Andrea Piunti, Neil L. Kelleher, Jeffrey N. Savas, Ali Shilatifard

Genes Dev. 2017 Oct 1; 31(19): 2003–2014. doi: 10.1101/gad.305201.117

PMCID:: PMC5710144

Abstract Article PDF–5.1M

Select item 570780513.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900214.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 539725315.

Animal Cryptochromes: Divergent Roles in Light Perception, Circadian Timekeeping and Beyond

Alicia K. Michael, Jennifer L. Fribourgh, Russell N. Van Gelder, Carrie L. Partch

Photochem Photobiol. Author manuscript; available in PMC 2018 Jan 18.

Published in final edited form as: Photochem Photobiol. 2017 Jan; 93(1): 128–140. Published online 2017 Jan 18. doi: 10.1111/php.12677

PMCID:: PMC5397253

Abstract Article PDF–1.2M

Select item 501019316.

dBRWD3 Regulates Tissue Overgrowth and Ectopic Gene Expression Caused by Polycomb Group Mutations

Hsueh-Tzu Shih, Wei-Yu Chen, Kwei-Yan Liu, Zong-Siou Shih, Yi-Jyun Chen, Paul-Chen Hsieh, Kuan-Lin Kuo, Kuo-How Huang, Pang-Hung Hsu, Ya-Wen Liu, Shih-Peng Chan, Hsiu-Hsiang Lee, Yu-Chen Tsai, June-Tai Wu

PLoS Genet. 2016 Sep; 12(9): e1006262. Published online 2016 Sep 2. doi: 10.1371/journal.pgen.1006262

PMCID:: PMC5010193

Abstract Article PDF–23M

Select item 488965817.

mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster

Gildas Lepennetier, Francesco Catania

G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231

PMCID:: PMC4889658

Abstract Article PDF–1.5M

Select item 480554518.

A genome-wide resource for the analysis of protein localisation in Drosophila

Mihail Sarov, Christiane Barz, Helena Jambor, Marco Y Hein, Christopher Schmied, Dana Suchold, Bettina Stender, Stephan Janosch, Vinay Vikas KJ, RT Krishnan, Aishwarya Krishnamoorthy, Irene RS Ferreira, Radoslaw K Ejsmont, Katja Finkl, Susanne Hasse, Philipp Kämpfer, Nicole Plewka, Elisabeth Vinis, Siegfried Schloissnig, Elisabeth Knust, Volker Hartenstein, Matthias Mann, Mani Ramaswami, K VijayRaghavan, Pavel Tomancak, Frank Schnorrer

eLife. 2016; 5: e12068. Published online 2016 Feb 20. doi: 10.7554/eLife.12068

PMCID:: PMC4805545

Abstract Article PDF–9.1M

Select item 478080919.

The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster

Nicolas Svetec, Julie M. Cridland, Li Zhao, David J. Begun

PLoS Genet. 2016 Mar; 12(3): e1005869. Published online 2016 Mar 7. doi: 10.1371/journal.pgen.1005869

PMCID:: PMC4780809

Abstract Article PDF–543K

Select item 473800520.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

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