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Select item 86644861.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 83842182.

Computational identification and experimental characterization of preferred downstream positions in human core promoters

René Dreos, Anna Sloutskin, Nati Malachi, Diana Ideses, Philipp Bucher, Tamar Juven-Gershon

PLoS Comput Biol. 2021 Aug; 17(8): e1009256. Published online 2021 Aug 12. doi: 10.1371/journal.pcbi.1009256

PMCID:: PMC8384218

Abstract Article PDF–2.6M

Select item 57078053.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890024.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 50689275.

A Drosophila LexA Enhancer-Trap Resource for Developmental Biology and Neuroendocrine Research

Lutz Kockel, Lutfi M. Huq, Anika Ayyar, Emma Herold, Elle MacAlpine, Madeline Logan, Christina Savvides, Grace E. S. Kim, Jiapei Chen, Theresa Clark, Trang Duong, Vahid Fazel-Rezai, Deanna Havey, Samuel Han, Ravi Jagadeesan, Eun Soo Jackie Kim, Diane Lee, Kaelina Lombardo, Ida Piyale, Hansen Shi, Lydia Stahr, Dana Tung, Uriel Tayvah, Flora Wang, Ja-Hon Wang, Sarah Xiao, Sydni M. Topper, Sangbin Park, Cheryl Rotondo, Anne E. Rankin, Townley W. Chisholm, Seung K. Kim

G3 (Bethesda) 2016 Oct; 6(10): 3017–3026. Published online 2016 Aug 15. doi: 10.1534/g3.116.031229

PMCID:: PMC5068927

Abstract Article PDF–2.0M

Select item 50376096.

Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis

Nina Koenecke, Jeff Johnston, Bjoern Gaertner, Malini Natarajan, Julia Zeitlinger

Genome Biol. 2016; 17: 196. Published online 2016 Sep 27. doi: 10.1186/s13059-016-1057-2

PMCID:: PMC5037609

Abstract Article PDF–2.2M

Select item 49374637.

Retinal Axon Guidance Requires Integration of Eya and the Jak/Stat Pathway into Phosphotyrosine-Based Signaling Circuitries in Drosophila

Charlene S. L. Hoi, Wenjun Xiong, Ilaria Rebay

Genetics. 2016 Jul; 203(3): 1283–1295. Published online 2016 May 16. doi: 10.1534/genetics.115.185918

Correction in:: Genetics. 2016 Sep; 204(1): 385.

PMCID:: PMC4937463

Abstract Article PDF–6.7M

Select item 49280478.

Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome

Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair

Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999

PMCID:: PMC4928047

Abstract Article PDF–3.1M

Select item 45283309.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832910.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288711.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 427152712.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

Select item 354218213.

Genome-Wide Screens for In Vivo Tinman Binding Sites Identify Cardiac Enhancers with Diverse Functional Architectures

Hong Jin, Robert Stojnic, Boris Adryan, Anil Ozdemir, Angelike Stathopoulos, Manfred Frasch

PLoS Genet. 2013 Jan; 9(1): e1003195. Published online 2013 Jan 10. doi: 10.1371/journal.pgen.1003195

PMCID:: PMC3542182

Abstract Article PDF–6.6M

Select item 353067714.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

Select item 346946715.

The Many Landscapes of Recombination in Drosophila melanogaster

Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin

PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905

PMCID:: PMC3469467

Abstract Article PDF–1.6M

Select item 331960816.

Genome-Wide Association Analysis of Oxidative Stress Resistance in Drosophila melanogaster

Allison L. Weber, George F. Khan, Michael M. Magwire, Crystal L. Tabor, Trudy F. C. Mackay, Robert R. H. Anholt

PLoS One. 2012; 7(4): e34745. Published online 2012 Apr 4. doi: 10.1371/journal.pone.0034745

PMCID:: PMC3319608

Abstract Article PDF–1009K

Select item 321996617.

Dynamic reprogramming of chromatin accessibility during Drosophila embryo development

Sean Thomas, Xiao-Yong Li, Peter J Sabo, Richard Sandstrom, Robert E Thurman, Theresa K Canfield, Erika Giste, William Fisher, Ann Hammonds, Susan E Celniker, Mark D Biggin, John A Stamatoyannopoulos

Genome Biol. 2011; 12(5): R43. Published online 2011 May 11. doi: 10.1186/gb-2011-12-5-r43

PMCID:: PMC3219966

Abstract Article PDF–1.5M

Select item 321582918.

Trachealess (Trh) regulates all tracheal genes during Drosophila embryogenesis

SeYeon Chung, Cy Chavez, Deborah J. Andrew

Dev Biol. Author manuscript; available in PMC 2012 Dec 1.

Published in final edited form as: Dev Biol. 2011 Dec 1; 360(1): 160–172. Published online 2011 Sep 22. doi: 10.1016/j.ydbio.2011.09.014

PMCID:: PMC3215829

Abstract Article PDF–2.6M

Select item 304044119.

A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionary-conserved pain gene

G. Gregory Neely, Andreas Hess, Michael Costigan, Alex C. Keene, Spyros Goulas, Michiel Langeslag, Robert S Griffin, Inna Belfer, Feng Dai, Shad Smith, Luda Diatchenko, Vaijayanti Gupta, Cui-ping Xia, Sabina Amann, Silke Kreitz, Cornelia Heindl-Erdmann, Susanne Wolz, Cindy V. Ly, Suchir Arora, Rinku Sarangi, Debasis Dan, Maria Novatchkova, Mark Rosenzweig, Dustin Gibson, Darwin Truong, Daniel Schramek, Tamara Zoranovic, Shane J. F. Cronin, Belinda Angjeli, Kay Brune, Georg Dietzl, William Maixner, Arabella Meixner, Winston Thomas, J. Andrew Pospisilik, Mattias Alenius, Michaela Kress, Sai Subramaniam, Paul A. Garrity, Hugo J. Bellen, Clifford J. Woolf, Josef M. Penninger

Cell. Author manuscript; available in PMC 2011 Nov 12.

Published in final edited form as: Cell. 2010 Nov 12; 143(4): 628–638. doi: 10.1016/j.cell.2010.09.047

PMCID:: PMC3040441

Abstract Article PDF–2.0M

Select item 289756620.

Three Key Subregions Contribute to the Function of the Downstream RNA Polymerase II Core Promoter

Joshua W. M. Theisen, Chin Yan Lim, James T. Kadonaga

Mol Cell Biol. 2010 Jul; 30(14): 3471–3479. Published online 2010 May 10. doi: 10.1128/MCB.00053-10

PMCID:: PMC2897566

Abstract Article PDF–1.5M

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