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Select item 99339151.

Modulation of protease expression by the transcription factor Ptx1/PITX regulates protein quality control during aging

Jianqin Jiao, Michelle Curley, Flavia A. Graca, Maricela Robles-Murguia, Abbas Shirinifard, David Finkelstein, Beisi Xu, Yiping Fan, Fabio Demontis

Cell Rep. Author manuscript; available in PMC 2023 Feb 16.

Published in final edited form as: Cell Rep. 2023 Jan 31; 42(1): 111970. Published online 2023 Jan 10. doi: 10.1016/j.celrep.2022.111970

PMCID:: PMC9933915

Abstract Article PDF–2.5M

Select item 76107032.

A SuperFamily-Wide Activity Atlas of Serine Hydrolases in Drosophila Melanogaster

Kundan Kumar, Amol Mhetre, Girish S. Ratnaparkhi, Siddhesh S. Kamat

Biochemistry. Author manuscript; available in PMC 2021 Oct 27.

Published in final edited form as: Biochemistry. 2021 Apr 27; 60(16): 1312–1324. Published online 2021 Apr 7. doi: 10.1021/acs.biochem.1c00171

PMCID:: PMC7610703

Abstract Article PDF–1.7M

Select item 69615783.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 65500694.

Unanchored ubiquitin chains do not lead to marked alterations in gene expression in Drosophila melanogaster

Jessica R. Blount, Danielle N. Meyer, Camille Akemann, Sean L. Johnson, Katherine Gurdziel, Tracie R. Baker, Sokol V. Todi

Biol Open. 2019 May 15; 8(5): bio043372. Published online 2019 May 16. doi: 10.1242/bio.043372

PMCID:: PMC6550069

Abstract Article PDF–1.3M

Select item 63582145.

Building a platform for predicting functions of serine protease-related proteins in Drosophila melanogaster and other insects

Xiaolong Cao, Haobo Jiang

Insect Biochem Mol Biol. Author manuscript; available in PMC 2019 Dec 1.

Published in final edited form as: Insect Biochem Mol Biol. 2018 Dec; 103: 53–69. Published online 2018 Oct 24. doi: 10.1016/j.ibmb.2018.10.006

PMCID:: PMC6358214

Abstract Article PDF–6.9M

Select item 63454936.

Immune-inducible non-coding RNA molecule lincRNA-IBIN connects immunity and metabolism in Drosophila melanogaster

Susanna Valanne, Tiina S. Salminen, Mirva Järvelä-Stölting, Laura Vesala, Mika Rämet

PLoS Pathog. 2019 Jan; 15(1): e1007504. Published online 2019 Jan 11. doi: 10.1371/journal.ppat.1007504

Correction in:: PLoS Pathog. 2019 Oct; 15(10): e1008088.

PMCID:: PMC6345493

Abstract Article PDF–2.8M

Select item 57078057.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890028.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 45689779.

Changes in neuronal CycD/Cdk4 activity affect aging, neurodegeneration, and oxidative stress

Amalia Icreverzi, Aida Flor A de la Cruz, David W Walker, Bruce A Edgar

Aging Cell. 2015 Oct; 14(5): 896–906. Published online 2015 Jul 29. doi: 10.1111/acel.12376

PMCID:: PMC4568977

Abstract Article PDF–2.1M

Select item 452833010.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832911.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 443630312.

Genome-Wide Association Analyses Point to Candidate Genes for Electric Shock Avoidance in Drosophila melanogaster

Mirjam Appel, Claus-Jürgen Scholz, Tobias Müller, Marcus Dittrich, Christian König, Marie Bockstaller, Tuba Oguz, Afshin Khalili, Emmanuel Antwi-Adjei, Tamas Schauer, Carla Margulies, Hiromu Tanimoto, Ayse Yarali

PLoS One. 2015; 10(5): e0126986. Published online 2015 May 18. doi: 10.1371/journal.pone.0126986

PMCID:: PMC4436303

Abstract Article PDF–939K

Select item 435288713.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114