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Select item 79387701.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 79279312.

Silencing of Ac45 Simultaneously Inhibits Osteoclast-Mediated Bone Resorption and Attenuates Dendritic Cell-Mediated Inflammation through Impairing Acidification and Cathepsin K Secretion

Wenbin Yang, Zheng Zhu, Longjiang Li, Abigail McVicar, Ning Gao, Lin Wang, Yi-Ping Li, Wei Chen

Infect Immun. 2021 Jan; 89(1): e00436-20. Prepublished online 2020 Oct 19. Published online 2020 Dec 15. doi: 10.1128/IAI.00436-20

PMCID:: PMC7927931

Abstract Article PDF–5.9M

Select item 74159913.

BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING)

Kou Motani, Hidetaka Kosako

J Biol Chem. 2020 Aug 7; 295(32): 11174–11183. Published online 2020 Jun 17. doi: 10.1074/jbc.RA120.014323

PMCID:: PMC7415991

Abstract Article PDF–2.0M

Select item 63954984.

A pH-sensitive luminal His-cluster promotes interaction of PAM with V-ATPase along the secretory and endocytic pathways of peptidergic cells

Vishwanatha K. Rao, Gerardo Zavala, Abhijit Deb Roy, Richard E. Mains, Betty A. Eipper

J Cell Physiol. Author manuscript; available in PMC 2020 Jun 1.

Published in final edited form as: J Cell Physiol. 2019 Jun; 234(6): 8683–8697. Published online 2018 Oct 14. doi: 10.1002/jcp.27528

PMCID:: PMC6395498

Abstract Article PDF–1.6M

Select item 48949755.

ATP6AP1 deficiency causes an immunodeficiency with hepatopathy, cognitive impairment and abnormal protein glycosylation

Eric J. R. Jansen, Sharita Timal, Margret Ryan, Angel Ashikov, Monique van Scherpenzeel, Laurie A. Graham, Hanna Mandel, Alexander Hoischen, Theodore C. Iancu, Kimiyo Raymond, Gerry Steenbergen, Christian Gilissen, Karin Huijben, Nick H. M. van Bakel, Yusuke Maeda, Richard J. Rodenburg, Maciej Adamowicz, Ellen Crushell, Hans Koenen, Darius Adams, Julia Vodopiutz, Susanne Greber-Platzer, Thomas Müller, Gregor Dueckers, Eva Morava, Jolanta Sykut-Cegielska, Gerard J. M. Martens, Ron A. Wevers, Tim Niehues, Martijn A. Huynen, Joris A. Veltman, Tom H. Stevens, Dirk J. Lefeber

Nat Commun. 2016; 7: 11600. Published online 2016 May 27. doi: 10.1038/ncomms11600

PMCID:: PMC4894975

Abstract Article PDF–2.8M

Select item 39517196.

V-ATPase subunit ATP6AP1 (Ac45) regulates osteoclast differentiation, extracellular acidification, lysosomal trafficking, and protease exocytosis in osteoclast-mediated bone resorption

De-Qin Yang, Shengmei Feng, Wei Chen, Haibo Zhao, Christie Paulson, Yi-Ping Li

J Bone Miner Res. Author manuscript; available in PMC 2014 Mar 13.

Published in final edited form as: J Bone Miner Res. 2012 Aug; 27(8): 1695–1707. doi: 10.1002/jbmr.1623

PMCID:: PMC3951719

Abstract Article PDF–8.4M

Select item 35754507.

The mitochondrial H⁺-ATP synthase and the lipogenic switch: New core components of metabolic reprogramming in induced pluripotent stem (iPS) cells

Alejandro Vazquez-Martin, Bruna Corominas-Faja, Sílvia Cufi, Luciano Vellon, Cristina Oliveras-Ferraros, Octavio J. Menendez, Jorge Joven, Ruth Lupu, Javier A. Menendez

Cell Cycle. 2013 Jan 15; 12(2): 207–218. doi: 10.4161/cc.23352

PMCID:: PMC3575450

Abstract Article PDF–2.6M

Select item 35724108.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 32108239.

Versatile Roles of V-ATPases Accessory Subunit Ac45 in Osteoclast Formation and Function

An Qin, Tak S. Cheng, Zhen Lin, Nathan J. Pavlos, Qing Jiang, Jiake Xu, Ke R. Dai, Ming H. Zheng

PLoS One. 2011; 6(11): e27155. Published online 2011 Nov 4. doi: 10.1371/journal.pone.0027155

PMCID:: PMC3210823

Abstract Article PDF–2.6M

Select item 317805910.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253411.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 298835312.

Inhibition of Osteoclast Bone Resorption by Disrupting Vacuolar H⁺-ATPase a3-B2 Subunit Interaction

Norbert Kartner, Yeqi Yao, Keying Li, Gazelle J. Crasto, Alessandro Datti, Morris F. Manolson

J Biol Chem. 2010 Nov 26; 285(48): 37476–37490. Published online 2010 Sep 13. doi: 10.1074/jbc.M110.123281

PMCID:: PMC2988353

Abstract Article PDF–3.6M

Select item 290957813.

Phenotypic annotation of the mouse X chromosome

Brian J. Cox, Marion Vollmer, Owen Tamplin, Mei Lu, Steffen Biechele, Marina Gertsenstein, Claude van Campenhout, Thomas Floss, Ralf Kühn, Wolfgang Wurst, Heiko Lickert, Janet Rossant

Genome Res. 2010 Aug; 20(8): 1154–1164. doi: 10.1101/gr.105106.110

PMCID:: PMC2909578

Abstract Article PDF–1.3M

Select item 252790914.

Role of furin in granular acidification in the endocrine pancreas: Identification of the V-ATPase subunit Ac45 as a candidate substrate

Els Louagie, Neil A. Taylor, Daisy Flamez, Anton J. M. Roebroek, Nicholas A. Bright, Sandra Meulemans, Roel Quintens, Pedro L. Herrera, Frans Schuit, Wim J. M. Van de Ven, John W. M. Creemers

Proc Natl Acad Sci U S A. 2008 Aug 26; 105(34): 12319–12324. Published online 2008 Aug 19. doi: 10.1073/pnas.0800340105

PMCID:: PMC2527909

Abstract Article PDF–677K

Select item 244234415.

Cytoplasmic Terminus of Vacuolar Type Proton Pump Accessory Subunit Ac45 Is Required for Proper Interaction with V₀ Domain Subunits and Efficient Osteoclastic Bone Resorption

Haotian Feng, Taksum Cheng, Nathan J. Pavlos, Kirk H. M. Yip, Amerigo Carrello, Ruth Seeber, Karin Eidne, Ming H. Zheng, Jiake Xu

J Biol Chem. 2008 May 9; 283(19): 13194–13204. doi: 10.1074/jbc.M709712200

PMCID:: PMC2442344

Abstract Article PDF–867K

Select item 189036816.

pH dependence and inhibition by extracellular calcium of proton currents via plasmalemmal vacuolar-type H⁺-ATPase in murine osteoclasts

Hiromu Sakai, Junko Kawawaki, Yoshie Moriura, Hiroyuki Mori, Hirokazu Morihata, Miyuki Kuno

J Physiol. 2006 Oct 15; 576(Pt 2): 417–425. Published online 2006 Aug 10. doi: 10.1113/jphysiol.2006.117176

PMCID:: PMC1890368

Abstract Article PDF–464K

Select item 141356817.

BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System

Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran

PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086

PMCID:: PMC1413568

Article PDF–99K

Select item 52892818.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 31099219.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098020.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

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