PMC Links for GEO Profiles (Select 36832887) - PMC

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 66023004.

New roles for the de-ubiquitylating enzyme OTUD4 in an RNA–protein network and RNA granules

Richa Das, Lukas Schwintzer, Stanislav Vinopal, Eva Aguado Roca, Marc Sylvester, Ana-Maria Oprisoreanu, Susanne Schoch, Frank Bradke, Meike Broemer

J Cell Sci. 2019 Jun 15; 132(12): jcs229252. Published online 2019 Jun 17. doi: 10.1242/jcs.229252

PMCID:: PMC6602300

Abstract Article

Select item 63334605.

ATG5 is required for B cell polarization and presentation of particulate antigens

Florent Arbogast, Johan Arnold, Philippe Hammann, Lauriane Kuhn, Johana Chicher, Diane Murera, Justine Weishaar, Sylviane Muller, Jean-Daniel Fauny, Frédéric Gros

Autophagy. 2019; 15(2): 280–294. Published online 2018 Sep 22. doi: 10.1080/15548627.2018.1516327

PMCID:: PMC6333460

Abstract Article PDF–2.7M

Select item 58016916.

CRISPR/Cas9 Engineering of Adult Mouse Liver Demonstrates That the Dnajb1–Prkaca Gene Fusion is Sufficient to Induce Tumors Resembling Fibrolamellar Hepatocellular Carcinoma

Lars H Engelholm, Anjum Riaz, Denise Serra, Frederik Dagnæs-Hansen, Jens V Johansen, Eric Santoni-Rugiu, Steen H Hansen, Francesco Niola, Morten Frödin

Gastroenterology. Author manuscript; available in PMC 2018 Dec 1.

Published in final edited form as: Gastroenterology. 2017 Dec; 153(6): 1662–1673.e10. Published online 2017 Sep 18. doi: 10.1053/j.gastro.2017.09.008

PMCID:: PMC5801691

Abstract Article PDF–1.0M

Select item 57406837.

DNAJB1–PRKACA fusion kinase interacts with β-catenin and the liver regenerative response to drive fibrolamellar hepatocellular carcinoma

Edward R. Kastenhuber, Gadi Lalazar, Shauna L. Houlihan, Darjus F. Tschaharganeh, Timour Baslan, Chi-Chao Chen, David Requena, Sha Tian, Benedikt Bosbach, John E. Wilkinson, Sanford M. Simon, Scott W. Lowe

Proc Natl Acad Sci U S A. 2017 Dec 12; 114(50): 13076–13084. Published online 2017 Nov 21. doi: 10.1073/pnas.1716483114

PMCID:: PMC5740683

Abstract Article PDF–1.9M

Select item 54608828.

Overexpression of the essential Sis1 chaperone reduces TDP-43 effects on toxicity and proteolysis

Sei-Kyoung Park, Joo Y. Hong, Fatih Arslan, Vydehi Kanneganti, Basant Patel, Alex Tietsort, Elizabeth M. H. Tank, Xingli Li, Sami J. Barmada, Susan W. Liebman

PLoS Genet. 2017 May; 13(5): e1006805. Published online 2017 May 22. doi: 10.1371/journal.pgen.1006805

PMCID:: PMC5460882

Abstract Article PDF–9.4M

Select item 48293509.

A cytosolic protein factor from the naked mole-rat activates proteasomes of other species and protects these from inhibition

Karl A. Rodriguez, Pawel A. Osmulski, Anson Pierce, Susan T. Weintraub, Maria Gaczynska, Rochelle Buffenstein

Biochim Biophys Acta. Author manuscript; available in PMC 2016 Apr 12.

Published in final edited form as: Biochim Biophys Acta. 2014 Nov; 1842(11): 2060–2072. Published online 2014 Jul 10. doi: 10.1016/j.bbadis.2014.07.005

PMCID:: PMC4829350

Abstract Article PDF–1.8M

Select item 482081110.

FOXE3 contributes to Peters anomaly through transcriptional regulation of an autophagy-associated protein termed DNAJB1

Shahid Y. Khan, Shivakumar Vasanth, Firoz Kabir, John D. Gottsch, Arif O. Khan, Raghothama Chaerkady, Mei-Chong W. Lee, Carmen C. Leitch, Zhiwei Ma, Julie Laux, Rafael Villasmil, Shaheen N. Khan, Sheikh Riazuddin, Javed Akram, Robert N. Cole, C. Conover Talbot, Nader Pourmand, Norann A. Zaghloul, J. Fielding Hejtmancik, S. Amer Riazuddin

Nat Commun. 2016; 7: 10953. Published online 2016 Mar 24. doi: 10.1038/ncomms10953

PMCID:: PMC4820811

Abstract Article PDF–2.6M

Select item 423246511.

Expression profile analysis of vulnerable CA1 pyramidal neurons in young-middle aged Ts65Dn mice

Melissa J. Alldred, Sang Han Lee, Eva Petkova, Stephen D. Ginsberg

J Comp Neurol. Author manuscript; available in PMC 2016 Jan 1.

Published in final edited form as: J Comp Neurol. 2015 Jan 1; 523(1): 61–74. Published online 2014 Aug 30. doi: 10.1002/cne.23663

PMCID:: PMC4232465

Abstract Article PDF–909K

Select item 394147612.

Correction of Cystathionine β-synthase Deficiency in Mice by Treatment with Proteasome Inhibitors

Sapna Gupta, Liqun Wang, Janet Anderl, Michael J. Slifker, Christopher Kirk, Warren D. Kruger

Hum Mutat. Author manuscript; available in PMC 2014 Aug 1.

Published in final edited form as: Hum Mutat. 2013 Aug; 34(8): 1085–1093. Published online 2013 May 13. doi: 10.1002/humu.22335

PMCID:: PMC3941476

Abstract Article PDF–1.8M

Select item 374445313.

An Exploration of Heat Tolerance in Mice Utilizing mRNA and microRNA Expression Analysis

Aminul Islam, Patricia A. Deuster, Joseph M. Devaney, Svetlana Ghimbovschi, Yifan Chen

PLoS One. 2013; 8(8): e72258. Published online 2013 Aug 15. doi: 10.1371/journal.pone.0072258

PMCID:: PMC3744453

Abstract Article PDF–5.4M

Select item 357241014.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 351136215.

Hsp40 Gene Therapy Exerts Therapeutic Effects on Polyglutamine Disease Mice via a Non-Cell Autonomous Mechanism

H. Akiko Popiel, Toshihide Takeuchi, Hiromi Fujita, Kazuhiro Yamamoto, Chiyomi Ito, Hiroshi Yamane, Shin-ichi Muramatsu, Tatsushi Toda, Keiji Wada, Yoshitaka Nagai

PLoS One. 2012; 7(11): e51069. Published online 2012 Nov 30. doi: 10.1371/journal.pone.0051069

PMCID:: PMC3511362

Abstract Article PDF–2.7M

Select item 336261316.

Cell Line Specific Modulation of Extracellular Aβ₄₂ by Hsp40

Anna Carnini, Lucas O. M. Scott, Eva Ahrendt, Juliane Proft, Robert J. Winkfein, Sung-Woo Kim, Michael A. Colicos, Janice E. A. Braun

PLoS One. 2012; 7(5): e37755. Published online 2012 May 29. doi: 10.1371/journal.pone.0037755

PMCID:: PMC3362613

Abstract Article PDF–6.5M

Select item 318641817.

Hsc70 Protein Interaction with Soluble and Fibrillar α-Synuclein

Samantha Pemberton, Karine Madiona, Laura Pieri, Mehdi Kabani, Luc Bousset, Ronald Melki

J Biol Chem. 2011 Oct 7; 286(40): 34690–34699. Published online 2011 Aug 10. doi: 10.1074/jbc.M111.261321

PMCID:: PMC3186418

Abstract Article PDF–2.7M

Select item 317805918.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253419.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 267390220.

Guidelines for the nomenclature of the human heat shock proteins

Harm H. Kampinga, Jurre Hageman, Michel J. Vos, Hiroshi Kubota, Robert M. Tanguay, Elspeth A. Bruford, Michael E. Cheetham, Bin Chen, Lawrence E. Hightower

Cell Stress Chaperones. 2009 Jan; 14(1): 105–111. Published online 2008 Jul 29. doi: 10.1007/s12192-008-0068-7

PMCID:: PMC2673902

Abstract Article PDF–124K

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