PMC Links for GEO Profiles (Select 36458953) - PMC

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 62980404.

Irisin Mediates Effects on Bone and Fat via αV Integrin Receptors

Hyeonwoo Kim, Christiane D. Wrann, Mark Jedrychowski, Sara Vidoni, Yukiko Kitase, Kenichi Nagano, Chenhe Zhou, Joshua Chou, Virginia-Jeni A. Parkman, Scott J. Novick, Timothy S. Strutzenberg, Bruce D. Pascal, Phuong T. Le, Daniel J. Brooks, Alexander M. Roche, Kaitlyn K. Gerber, Laura Mattheis, Wenjing Chen, Hua Tu, Mary L. Bouxsein, Patrick R. Griffin, Roland Baron, Clifford J. Rosen, Lynda F. Bonewald, Bruce M. Spiegelman

Cell. Author manuscript; available in PMC 2019 Dec 13.

Published in final edited form as: Cell. 2018 Dec 13; 175(7): 1756–1768.e17. doi: 10.1016/j.cell.2018.10.025

Correction in:: Cell. 2019 Jul 11; 178(2): 507–508.

PMCID:: PMC6298040

Abstract Article PDF–1.2M

Select item 52909905.

Widespread and dynamic translational control of red blood cell development

Juan R. Alvarez-Dominguez, Xu Zhang, Wenqian Hu

Blood. 2017 Feb 2; 129(5): 619–629. Prepublished online 2016 Nov 29. doi: 10.1182/blood-2016-09-741835

PMCID:: PMC5290990

Abstract Article

Select item 49247176.

Overexpression of TSC-22 (transforming growth factor-β-stimulated clone-22) causes marked obesity, splenic abnormality and B cell lymphoma in transgenic mice

Daisuke Uchida, Hitoshi Kawamata, Fumie Omotehara, Yoshihiro Miwa, Hideki Horiuchi, Tadashi Furihata, Masatsugu Tachibana, Takahiro Fujimori

Oncotarget. 2016 Mar 22; 7(12): 14310–14323. Published online 2016 Feb 10. doi: 10.18632/oncotarget.7308

PMCID:: PMC4924717

Abstract Article PDF–3.0M

Select item 43584037.

Control of a neuronal morphology program by an RNA-binding zinc finger protein, Unkempt

Jernej Murn, Kathi Zarnack, Yawei J. Yang, Omer Durak, Elisabeth A. Murphy, Sihem Cheloufi, Dilenny M. Gonzalez, Marianna Teplova, Tomaž Curk, Johannes Zuber, Dinshaw J. Patel, Jernej Ule, Nicholas M. Luscombe, Li-Huei Tsai, Christopher A. Walsh, Yang Shi

Genes Dev. 2015 Mar 1; 29(5): 501–512. doi: 10.1101/gad.258483.115

PMCID:: PMC4358403

Abstract Article PDF–1.4M

Select item 43195598.

A high resolution spatiotemporal atlas of gene expression of the developing mouse brain

Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones

Neuron. Author manuscript; available in PMC 2015 Jul 16.

Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033

PMCID:: PMC4319559

Abstract Article PDF–3.0M

Select item 40677699.

A genomic atlas of mouse hypothalamic development

Tomomi Shimogori, Daniel A Lee, Ana Miranda-Angulo, Yanqin Yang, Hong Wang, Lizhi Jiang, Aya C Yoshida, Ayane Kataoka, Hiromi Mashiko, Marina Avetisyan, Lixin Qi, Jiang Qian, Seth Blackshaw

Nat Neurosci. Author manuscript; available in PMC 2014 Jun 24.

Published in final edited form as: Nat Neurosci. 2010 Jun; 13(6): 767–775. Published online 2010 May 2. doi: 10.1038/nn.2545

PMCID:: PMC4067769

Abstract Article PDF–1.8M

Select item 390107010.

Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation

Juan R. Alvarez-Dominguez, Wenqian Hu, Bingbing Yuan, Jiahai Shi, Staphany S. Park, Austin A. Gromatzky, Alexander van Oudenaarden, Harvey F. Lodish

Blood. 2014 Jan 23; 123(4): 570–581. Prepublished online 2013 Nov 7. doi: 10.1182/blood-2013-10-530683

PMCID:: PMC3901070

Abstract Article

Select item 379774811.

The AERO System: A 3D-Like Approach for Recording Gene Expression Patterns in the Whole Mouse Embryo

Hirohito Shimizu, Atsushi Kubo, Kenta Uchibe, Megumi Hashimoto, Shigetoshi Yokoyama, Shuji Takada, Kazuhiko Mitsuoka, Hiroshi Asahara

PLoS One. 2013; 8(10): e75754. Published online 2013 Oct 16. doi: 10.1371/journal.pone.0075754

PMCID:: PMC3797748

Abstract Article PDF–564K

Select item 367036512.

Notch2 regulates BMP signaling and epithelial morphogenesis in the ciliary body of the mouse eye

Yi Zhou, Christopher Tanzie, Zhipeng Yan, Shuyi Chen, Michael Duncan, Karin Gaudenz, Hua Li, Christopher Seidel, Brandy Lewis, Andrea Moran, Richard T. Libby, Amy E. Kiernan, Ting Xie

Proc Natl Acad Sci U S A. 2013 May 28; 110(22): 8966–8971. Published online 2013. doi: 10.1073/pnas.1218145110

PMCID:: PMC3670365

Abstract Article PDF–1.3M

Select item 335650513.

Congenital Asplenia in Mice and Humans with Mutations in a Pbx/Nkx2-5/p15 Module

Matthew Koss, Alexandre Bolze, Andrea Brendolan, Matilde Saggese, Terence D. Capellini, Ekaterina Bojilova, Bertrand Boisson, Owen W.J. Prall, David Elliott, Mark Solloway, Elisa Lenti, Chisa Hidaka, Ching-Pin Chang, Nizar Mahlaoui, Richard P. Harvey, Jean-Laurent Casanova, Licia Selleri

Dev Cell. Author manuscript; available in PMC 2013 May 15.

Published in final edited form as: Dev Cell. 2012 May 15; 22(5): 913–926. Published online 2012 May 3. doi: 10.1016/j.devcel.2012.02.009

PMCID:: PMC3356505

Abstract Article PDF–6.8M

Select item 330296314.

STRAIN-SPECIFIC MODIFIER GENES GOVERNING CRANIOFACIAL PHENOTYPES

Partha Mukhopadhyay, Guy Brock, Cynthia Webb, M. Michele Pisano, Robert M Greene

Birth Defects Res A Clin Mol Teratol. Author manuscript; available in PMC 2013 Mar 1.

Published in final edited form as: Birth Defects Res A Clin Mol Teratol. 2012 Mar; 94(3): 162–175. Published online 2012 Feb 28. doi: 10.1002/bdra.22890

PMCID:: PMC3302963

Abstract Article PDF–554K

Select item 317805915.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 316508816.

Identification of Fat4 and Tsc22d1 as novel candidate genes for spontaneous pulmonary adenomas

Annerose Berndt, Clinton L Cario, Kathleen A Silva, Victoria E Kennedy, David E Harrison, Beverly Paigen, John P Sundberg

Cancer Res. Author manuscript; available in PMC 2012 Sep 1.

Published in final edited form as: Cancer Res. 2011 Sep 1; 71(17): 5779–5791. Published online 2011 Jul 15. doi: 10.1158/0008-5472.CAN-11-1418

PMCID:: PMC3165088

Abstract Article PDF–100K

Select item 311015117.

A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58

Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara

Dev Cell. Author manuscript; available in PMC 2011 Jun 7.

Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011

PMCID:: PMC3110151

Abstract Article PDF–2.0M

Select item 302253418.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 296250019.

Post-transcriptional Up-regulation of Tsc-22 by Ybx1, a Target of miR-216a, Mediates TGF-β-induced Collagen Expression in Kidney Cells

Mitsuo Kato, Lin Wang, Sumanth Putta, Mei Wang, Hang Yuan, Guangdong Sun, Linda Lanting, Ivan Todorov, John J. Rossi, Rama Natarajan

J Biol Chem. 2010 Oct 29; 285(44): 34004–34015. Published online 2010 Aug 16. doi: 10.1074/jbc.M110.165027

PMCID:: PMC2962500

Abstract Article PDF–3.1M

Select item 291674220.

Identification of genes expressed preferentially in the developing peripheral margin of the optic cup

Jeffrey M. Trimarchi, Seo-Hee Cho, Constance L. Cepko

Dev Dyn. Author manuscript; available in PMC 2010 Aug 5.

Published in final edited form as: Dev Dyn. 2009 Sep; 238(9): 2327–2329. doi: 10.1002/dvdy.21973

PMCID:: PMC2916742

Abstract Article PDF–8.5M

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