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Items: 1 to 20 of 38

1.
Targeted RNAi screen identifies transcriptional mechanisms that prevent premature degeneration of adult photoreceptors
Spencer E. Escobedo, Sarah E. McGovern, Juan P. Jauregui-Lozano, Sarah C. Stanhope, Paul Anik, Kratika Singhal, Ryan DeBernardis, Vikki M. Weake
Front Epigenet Epigenom. Author manuscript; available in PMC 2023 Oct 27.
Published in final edited form as: Front Epigenet Epigenom. 2023; 1: 1187980. Published online 2023 May 5. doi: 10.3389/freae.2023.1187980
PMCID:
PMC10603763
AbstractArticlePDF–1.3M
2.
Shared enhancer gene regulatory networks between wound and oncogenic programs
Swann Floc'hlay, Ramya Balaji, Dimitrije Stanković, Valerie M Christiaens, Carmen Bravo González-Blas, Seppe De Winter, Gert J Hulselmans, Maxime De Waegeneer, Xiaojiang Quan, Duygu Koldere, Mardelle Atkins, Georg Halder, Mirka Uhlirova, Anne-Kathrin Classen, Stein Aerts
eLife. 2023; 12: e81173. Published online 2023 May 3. doi: 10.7554/eLife.81173
PMCID:
PMC10238094
AbstractArticlePDF–8.8M
3.
A modERN resource: identification of Drosophila transcription factor candidate target genes using RNAi
William W Fisher, Ann S Hammonds, Richard Weiszmann, Benjamin W Booth, Louis Gevirtzman, Jaeda E J Patton, Connor A Kubo, Robert H Waterston, Susan E Celniker
Genetics. 2023 Apr; 223(4): iyad004. Published online 2023 Jan 19. doi: 10.1093/genetics/iyad004
PMCID:
PMC10078917
AbstractArticlePDF–18M
4.
Enteric bacterial infection in Drosophila induces whole-body alterations in metabolic gene expression independently of the immune deficiency signaling pathway
Rujuta Deshpande, Byoungchun Lee, Savraj S Grewal
G3 (Bethesda) 2022 Nov; 12(11): jkac163. Published online 2022 Jul 4. doi: 10.1093/g3journal/jkac163
PMCID:
PMC9635644
AbstractArticlePDF–2.2M
5.
Tumor–host interactions through the lens of Drosophila
David Bilder, Katy Ong, Tsai-Ching Hsi, Kavya Adiga, Jung Kim
Nat Rev Cancer. Author manuscript; available in PMC 2022 May 1.
Published in final edited form as: Nat Rev Cancer. 2021 Nov; 21(11): 687–700. Published online 2021 Aug 13. doi: 10.1038/s41568-021-00387-5
PMCID:
PMC8669834
AbstractArticlePDF–385K
6.
dTcf/Pangolin suppresses growth and tumor formation in Drosophila
Shilin Song, Diana Andrejeva, Flávia C. P. Freitas, Stephen M. Cohen, Héctor Herranz
Proc Natl Acad Sci U S A. 2019 Jul 9; 116(28): 14055–14064. Published online 2019 Jun 24. doi: 10.1073/pnas.1816981116
PMCID:
PMC6628801
AbstractArticlePDF–2.3M
7.
Generation of a versatile BiFC ORFeome library for analyzing protein–protein interactions in live Drosophila
Johannes Bischof, Marilyne Duffraisse, Edy Furger, Leiore Ajuria, Guillaume Giraud, Solene Vanderperre, Rachel Paul, Mikael Björklund, Damien Ahr, Alexis W Ahmed, Lionel Spinelli, Christine Brun, Konrad Basler, Samir Merabet
eLife. 2018; 7: e38853. Published online 2018 Sep 24. doi: 10.7554/eLife.38853
PMCID:
PMC6177257
AbstractArticlePDF–4.9M
8.
Embryonic expression patterns and phylogenetic analysis of panarthropod sox genes: insight into nervous system development, segmentation and gonadogenesis
Ralf Janssen, Emil Andersson, Ellinor Betnér, Sifra Bijl, Will Fowler, Lars Höök, Jake Leyhr, Alexander Mannelqvist, Virginia Panara, Kate Smith, Sydney Tiemann
BMC Evol Biol. 2018; 18: 88. Published online 2018 Jun 8. doi: 10.1186/s12862-018-1196-z
PMCID:
PMC5994082
AbstractArticlePDF–25M
9.
Impaired Wnt signaling in dopamine containing neurons is associated with pathogenesis in a rotenone triggered Drosophila Parkinson’s disease model
Flora Stephano, Stella Nolte, Julia Hoffmann, Samar El-Kholy, Jakob von Frieling, Iris Bruchhaus, Christine Fink, Thomas Roeder
Sci Rep. 2018; 8: 2372. Published online 2018 Feb 5. doi: 10.1038/s41598-018-20836-w
PMCID:
PMC5799194
AbstractArticlePDF–2.0M
10.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
11.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
12.
mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster
Gildas Lepennetier, Francesco Catania
G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231
PMCID:
PMC4889658
AbstractArticlePDF–1.5M
13.
A genome-wide resource for the analysis of protein localisation in Drosophila
Mihail Sarov, Christiane Barz, Helena Jambor, Marco Y Hein, Christopher Schmied, Dana Suchold, Bettina Stender, Stephan Janosch, Vinay Vikas KJ, RT Krishnan, Aishwarya Krishnamoorthy, Irene RS Ferreira, Radoslaw K Ejsmont, Katja Finkl, Susanne Hasse, Philipp Kämpfer, Nicole Plewka, Elisabeth Vinis, Siegfried Schloissnig, Elisabeth Knust, Volker Hartenstein, Matthias Mann, Mani Ramaswami, K VijayRaghavan, Pavel Tomancak, Frank Schnorrer
eLife. 2016; 5: e12068. Published online 2016 Feb 20. doi: 10.7554/eLife.12068
PMCID:
PMC4805545
AbstractArticlePDF–9.1M
14.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
15.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
16.
The Genetic Basis for Variation in Olfactory Behavior in Drosophila melanogaster
Gunjan H. Arya, Michael M. Magwire, Wen Huang, Yazmin L. Serrano-Negron, Trudy F.C. Mackay, Robert R.H. Anholt
Chem Senses. 2015 May; 40(4): 233–243. Published online 2015 Feb 15. doi: 10.1093/chemse/bjv001
PMCID:
PMC4398050
AbstractArticlePDF–8.9M
17.
A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development
Claus Schertel, Monica Albarca, Claudia Rockel-Bauer, Nicholas W. Kelley, Johannes Bischof, Korneel Hens, Erik van Nimwegen, Konrad Basler, Bart Deplancke
Genome Res. 2015 Apr; 25(4): 514–523. doi: 10.1101/gr.181305.114
PMCID:
PMC4381523
AbstractArticlePDF–700K
18.
Conservation of transcription factor binding specificities across 600 million years of bilateria evolution
Kazuhiro R Nitta, Arttu Jolma, Yimeng Yin, Ekaterina Morgunova, Teemu Kivioja, Junaid Akhtar, Korneel Hens, Jarkko Toivonen, Bart Deplancke, Eileen E M Furlong, Jussi Taipale
eLife. 2015; 4: e04837. Published online 2015 Mar 17. doi: 10.7554/eLife.04837
PMCID:
PMC4362205
AbstractArticlePDF–3.7M
19.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
20.
Spatial expression of transcription factors in Drosophila embryonic organ development
Ann S Hammonds, Christopher A Bristow, William W Fisher, Richard Weiszmann, Siqi Wu, Volker Hartenstein, Manolis Kellis, Bin Yu, Erwin Frise, Susan E Celniker
Genome Biol. 2013; 14(12): R140. Published online 2013 Dec 20. doi: 10.1186/gb-2013-14-12-r140
PMCID:
PMC4053779
AbstractArticlePDF–1.8M

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