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Items: 1 to 20 of 45

1.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
2.
Fat body p53 regulates systemic insulin signaling and autophagy under nutrient stress via Drosophila Upd2 repression
María Clara Ingaramo, Juan Andrés Sánchez, Norbert Perrimon, Andrés Dekanty
Cell Rep. Author manuscript; available in PMC 2022 Apr 25.
Published in final edited form as: Cell Rep. 2020 Oct 27; 33(4): 108321. doi: 10.1016/j.celrep.2020.108321
PMCID:
PMC9036415
AbstractArticlePDF–1.3M
3.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
4.
Hecw controls oogenesis and neuronal homeostasis by promoting the liquid state of ribonucleoprotein particles
Valentina Fajner, Fabio Giavazzi, Simona Sala, Amanda Oldani, Emanuele Martini, Francesco Napoletano, Dario Parazzoli, Giuliana Cesare, Roberto Cerbino, Elena Maspero, Thomas Vaccari, Simona Polo
Nat Commun. 2021; 12: 5488. Published online 2021 Sep 16. doi: 10.1038/s41467-021-25809-8
PMCID:
PMC8446043
AbstractArticlePDF–9.4M
5.
The Exon Junction Complex and intron removal prevent re-splicing of mRNA
Brian Joseph, Eric C. Lai
PLoS Genet. 2021 May; 17(5): e1009563. Published online 2021 May 25. doi: 10.1371/journal.pgen.1009563
PMCID:
PMC8184009
AbstractArticlePDF–2.4M
6.
Single cell transcriptome atlas of the Drosophila larval brain
Clarisse Brunet Avalos, G Larisa Maier, Rémy Bruggmann, Simon G Sprecher
eLife. 2019; 8: e50354. Published online 2019 Nov 20. doi: 10.7554/eLife.50354
PMCID:
PMC6894929
AbstractArticlePDF–5.0M
7.
Tissue-specific (ts)CRISPR as an efficient strategy for in vivo screening in Drosophila
Hagar Meltzer, Efrat Marom, Idan Alyagor, Oded Mayseless, Victoria Berkun, Netta Segal-Gilboa, Tamar Unger, David Luginbuhl, Oren Schuldiner
Nat Commun. 2019; 10: 2113. Published online 2019 May 8. doi: 10.1038/s41467-019-10140-0
PMCID:
PMC6506539
AbstractArticlePDF–6.5M
8.
Headcase and Unkempt Regulate Tissue Growth and Cell Cycle Progression in Response to Nutrient Restriction
Naren Li, Qinfang Liu, Yulan Xiong, Jianzhong Yu
Cell Rep. Author manuscript; available in PMC 2019 Jan 29.
Published in final edited form as: Cell Rep. 2019 Jan 15; 26(3): 733–747.e3. doi: 10.1016/j.celrep.2018.12.086
PMCID:
PMC6350942
AbstractArticlePDF–3.9M
9.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
10.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
11.
Adaptation to Chronic Nutritional Stress Leads to Reduced Dependence on Microbiota in Drosophila melanogaster
Berra Erkosar, Sylvain Kolly, Jan R. van der Meer, Tadeusz J. Kawecki
mBio. 2017 Sep-Oct; 8(5): e01496-17. Published online 2017 Oct 24. doi: 10.1128/mBio.01496-17
PMCID:
PMC5654931
AbstractArticlePDF–691K
12.
Proteome-wide association studies identify biochemical modules associated with a wing-size phenotype in Drosophila melanogaster
Hirokazu Okada, H. Alexander Ebhardt, Sibylle Chantal Vonesch, Ruedi Aebersold, Ernst Hafen
Nat Commun. 2016; 7: 12649. Published online 2016 Sep 1. doi: 10.1038/ncomms12649
PMCID:
PMC5025782
AbstractArticlePDF–2.2M
13.
A high-throughput pipeline for the production of synthetic antibodies for analysis of ribonucleoprotein complexes
Hong Na, John D. Laver, Jouhyun Jeon, Fateh Singh, Kristin Ancevicius, Yujie Fan, Wen Xi Cao, Kun Nie, Zhenglin Yang, Hua Luo, Miranda Wang, Olivia Rissland, J. Timothy Westwood, Philip M. Kim, Craig A. Smibert, Howard D. Lipshitz, Sachdev S. Sidhu
RNA. 2016 Apr; 22(4): 636–655. doi: 10.1261/rna.055186.115
PMCID:
PMC4793217
AbstractArticlePDF–1.5M
14.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
15.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
16.
REPTOR and REPTOR-BP regulate organismal metabolism and transcription downstream of TORC1
Marcel Tiebe, Marilena Lutz, Adriana De La Garza, Tina Buechling, Michael Boutros, Aurelio A. Teleman
Dev Cell. Author manuscript; available in PMC 2016 May 4.
Published in final edited form as: Dev Cell. 2015 May 4; 33(3): 272–284. Published online 2015 Apr 23. doi: 10.1016/j.devcel.2015.03.013
PMCID:
PMC4430829
AbstractArticlePDF–1.8M
17.
Identification of Genes That Promote or Inhibit Olfactory Memory Formation in Drosophila
Erica Walkinshaw, Yunchao Gai, Caitlin Farkas, Daniel Richter, Eric Nicholas, Krystyna Keleman, Ronald L. Davis
Genetics. 2015 Apr; 199(4): 1173–1182. Published online 2015 Feb 2. doi: 10.1534/genetics.114.173575
PMCID:
PMC4391555
AbstractArticlePDF–1.1M
18.
A library of MiMICs allows tagging of genes and reversible, spatial and temporal knockdown of proteins in Drosophila
Sonal Nagarkar-Jaiswal, Pei-Tseng Lee, Megan E Campbell, Kuchuan Chen, Stephanie Anguiano-Zarate, Manuel Cantu Gutierrez, Theodore Busby, Wen-Wen Lin, Yuchun He, Karen L Schulze, Benjamin W Booth, Martha Evans-Holm, Koen JT Venken, Robert W Levis, Allan C Spradling, Roger A Hoskins, Hugo J Bellen
eLife. 2015; 4: e05338. Published online 2015 Mar 31. doi: 10.7554/eLife.05338
PMCID:
PMC4379497
AbstractArticlePDF–7.7M
19.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
20.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K

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