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Items: 1 to 20 of 51

1.
When Down Is Up: Heterochromatin, Nuclear Organization and X Upregulation
Reem Makki, Victoria H. Meller
Cells. 2021 Dec; 10(12): 3416. Published online 2021 Dec 4. doi: 10.3390/cells10123416
PMCID:
PMC8700316
AbstractArticlePDF–988K
2.
A single-cell atlas reveals unanticipated cell type complexity in Drosophila ovaries
Maija Slaidina, Selena Gupta, Torsten U. Banisch, Ruth Lehmann
Genome Res. 2021 Oct; 31(10): 1938–1951. doi: 10.1101/gr.274340.120
PMCID:
PMC8494228
AbstractArticlePDF–15M
3.
Insights into HP1a-Chromatin Interactions
Silvia Meyer-Nava, Victor E. Nieto-Caballero, Mario Zurita, Viviana Valadez-Graham
Cells. 2020 Aug; 9(8): 1866. Published online 2020 Aug 9. doi: 10.3390/cells9081866
PMCID:
PMC7465937
AbstractArticlePDF–2.2M
4.
Painting of Fourth and the X-Linked 1.688 Satellite in D. melanogaster Is Involved in Chromosome-Wide Gene Regulation
Samaneh Ekhteraei-Tousi, Jacob Lewerentz, Jan Larsson
Cells. 2020 Feb; 9(2): 323. Published online 2020 Jan 30. doi: 10.3390/cells9020323
PMCID:
PMC7072490
AbstractArticlePDF–5.2M
5.
Molecular and genetic organization of bands and interbands in the dot chromosome of Drosophila melanogaster
Darya S. Sidorenko, Ivan A. Sidorenko, Tatyana Yu. Zykova, Fedor P. Goncharov, Jan Larsson, Igor F. Zhimulev
Chromosoma. 2019; 128(2): 97–117. Published online 2019 Apr 30. doi: 10.1007/s00412-019-00703-x
PMCID:
PMC6536484
AbstractArticlePDF–8.1M
6.
Facultative dosage compensation of developmental genes on autosomes in Drosophila and mouse embryonic stem cells
Claudia Isabelle Keller Valsecchi, M. Felicia Basilicata, Giuseppe Semplicio, Plamen Georgiev, Noel Marie Gutierrez, Asifa Akhtar
Nat Commun. 2018; 9: 3626. Published online 2018 Sep 7. doi: 10.1038/s41467-018-05642-2
PMCID:
PMC6128902
AbstractArticlePDF–4.7M
7.
The X-linked 1.688 Satellite in Drosophila melanogaster Promotes Specific Targeting by Painting of Fourth
Maria Kim, Samaneh Ekhteraei-Tousi, Jacob Lewerentz, Jan Larsson
Genetics. 2018 Feb; 208(2): 623–632. Published online 2017 Dec 12. doi: 10.1534/genetics.117.300581
PMCID:
PMC5788526
AbstractArticlePDF–1.2M
8.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
9.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
10.
SUMO-Enriched Proteome for Drosophila Innate Immune Response
Mithila Handu, Bhagyashree Kaduskar, Ramya Ravindranathan, Amarendranath Soory, Ritika Giri, Vijay Barathi Elango, Harsha Gowda, Girish S. Ratnaparkhi
G3 (Bethesda) 2015 Oct; 5(10): 2137–2154. Published online 2015 Aug 18. doi: 10.1534/g3.115.020958
PMCID:
PMC4592996
AbstractArticlePDF–2.0M
11.
Genome-wide mapping of Painting of fourth on Drosophila melanogaster salivary gland polytene chromosomes
Anna-Mia Johansson, Jan Larsson
Genom Data. 2014 Dec; 2: 63–65. Published online 2014 Apr 28. doi: 10.1016/j.gdata.2014.04.007
PMCID:
PMC4536025
AbstractArticlePDF–326K
12.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
13.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
14.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
15.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
16.
Comparative analysis of metazoan chromatin organization
Joshua W. K. Ho, Youngsook L. Jung, Tao Liu, Burak H. Alver, Soohyun Lee, Kohta Ikegami, Kyung-Ah Sohn, Aki Minoda, Michael Y. Tolstorukov, Alex Appert, Stephen C. J. Parker, Tingting Gu, Anshul Kundaje, Nicole C. Riddle, Eric Bishop, Thea A. Egelhofer, Sheng’en Shawn Hu, Artyom A. Alekseyenko, Andreas Rechtsteiner, Dalal Asker, Jason A. Belsky, Sarah K. Bowman, Q. Brent Chen, Ron A-J Chen, Daniel S. Day, Yan Dong, Andrea C. Dose, Xikun Duan, Charles B. Epstein, Sevinc Ercan, Elise A. Feingold, Francesco Ferrari, Jacob M. Garrigues, Nils Gehlenborg, Peter J. Good, Psalm Haseley, Daniel He, Moritz Herrmann, Michael M. Hoffman, Tess E. Jeffers, Peter V. Kharchenko, Paulina Kolasinska-Zwierz, Chitra V. Kotwaliwale, Nischay Kumar, Sasha A. Langley, Erica N. Larschan, Isabel Latorre, Maxwell W. Libbrecht, Xueqiu Lin, Richard Park, Michael J. Pazin, Hoang N. Pham, Annette Plachetka, Bo Qin, Yuri B. Schwartz, Noam Shoresh, Przemyslaw Stempor, Anne Vielle, Chengyang Wang, Christina M. Whittle, Huiling Xue, Robert E. Kingston, Ju Han Kim, Bradley E. Bernstein, Abby F. Dernburg, Vincenzo Pirrotta, Mitzi I. Kuroda, William S. Noble, Thomas D. Tullius, Manolis Kellis, David M. MacAlpine, Susan Strome, Sarah C. R. Elgin, Xiaole Shirley Liu, Jason D. Lieb, Julie Ahringer, Gary H. Karpen, Peter J. Park
Nature. Author manuscript; available in PMC 2014 Nov 11.
Published in final edited form as: Nature. 2014 Aug 28; 512(7515): 449–452. doi: 10.1038/nature13415
PMCID:
PMC4227084
ArticlePDF–1.1M
17.
Basement Membrane and Cell Integrity of Self-Tissues in Maintaining Drosophila Immunological Tolerance
Moon Jong Kim, Kwang-Min Choe
PLoS Genet. 2014 Oct; 10(10): e1004683. Published online 2014 Oct 16. doi: 10.1371/journal.pgen.1004683
PMCID:
PMC4199487
AbstractArticlePDF–1.4M
18.
RNA editing regulates transposon-mediated heterochromatic gene silencing
Yiannis A. Savva, James E.C Jepson, Yao-Jen Chang, Rachel Whitaker, Brian C. Jones, Georges St. Laurent, Michael R. Tackett, Philipp Kapranov, Nan Jiang, Guyu Du, Stephen L. Helfand, Robert A. Reenan
Nat Commun. Author manuscript; available in PMC 2014 Apr 21.
Published in final edited form as: Nat Commun. 2013; 4: 2745. doi: 10.1038/ncomms3745
PMCID:
PMC3992701
AbstractArticlePDF–1.5M
19.
Transcriptional effects of gene dose reduction
Zhen-Xia Chen, Kseniya Golovnina, Hina Sultana, Satish Kumar, Brian Oliver
Biol Sex Differ. 2014; 5: 5. Published online 2014 Mar 3. doi: 10.1186/2042-6410-5-5
PMCID:
PMC3974007
AbstractArticlePDF–273K
20.
Global Quantitative Modeling of Chromatin Factor Interactions
Jian Zhou, Olga G. Troyanskaya
PLoS Comput Biol. 2014 Mar; 10(3): e1003525. Published online 2014 Mar 27. doi: 10.1371/journal.pcbi.1003525
PMCID:
PMC3967939
AbstractArticlePDF–1.9M

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