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Select item 81960131.

Reliable identification of protein-protein interactions by crosslinking mass spectrometry

Swantje Lenz, Ludwig R. Sinn, Francis J. O’Reilly, Lutz Fischer, Fritz Wegner, Juri Rappsilber

Nat Commun. 2021; 12: 3564. Published online 2021 Jun 11. doi: 10.1038/s41467-021-23666-z

PMCID:: PMC8196013

Abstract Article PDF–1.6M

Select item 67378932.

Maintaining Integrity Under Stress: Envelope Stress Response Regulation of Pathogenesis in Gram-Negative Bacteria

Claire L. Hews, Timothy Cho, Gary Rowley, Tracy L. Raivio

Front Cell Infect Microbiol. 2019; 9: 313. Published online 2019 Sep 4. doi: 10.3389/fcimb.2019.00313

PMCID:: PMC6737893

Abstract Article PDF–1.5M

Select item 66488963.

Structures and mechanism of transcription initiation by bacterial ECF factors

Chengli Fang, Lingting Li, Liqiang Shen, Jing Shi, Sheng Wang, Yu Feng, Yu Zhang

Nucleic Acids Res. 2019 Jul 26; 47(13): 7094–7104. Published online 2019 May 27. doi: 10.1093/nar/gkz470

PMCID:: PMC6648896

Abstract Article PDF–4.0M

Select item 59499864.

Cryo-EM structure of Escherichia coli σ⁷⁰ RNA polymerase and promoter DNA complex revealed a role of σ non-conserved region during the open complex formation

Anoop Narayanan, Frank S. Vago, Kunpeng Li, M. Zuhaib Qayyum, Dinesh Yernool, Wen Jiang, Katsuhiko S. Murakami

J Biol Chem. 2018 May 11; 293(19): 7367–7375. Published online 2018 Mar 26. doi: 10.1074/jbc.RA118.002161

PMCID:: PMC5949986

Abstract Article PDF–2.8M

Select item 57376415.

Phenotypic consequences of RNA polymerase dysregulation in Escherichia coli

Paramita Sarkar, Amy Switzer, Christine Peters, Joe Pogliano, Sivaramesh Wigneshweraraj

Nucleic Acids Res. 2017 Nov 2; 45(19): 11131–11143. Published online 2017 Aug 23. doi: 10.1093/nar/gkx733

PMCID:: PMC5737641

Abstract Article PDF–4.0M

Select item 57370766.

Insights into RNA polymerase catalysis and adaptive evolution gained from mutational analysis of a locus conferring rifampicin resistance

Olga Yurieva, Vadim Nikiforov, Jr, Vadim Nikiforov, Michael O’Donnell, Arkady Mustaev

Nucleic Acids Res. 2017 Nov 2; 45(19): 11327–11340. Published online 2017 Sep 25. doi: 10.1093/nar/gkx813

PMCID:: PMC5737076

Abstract Article PDF–9.1M

Select item 54932967.

The whole set of the constitutive promoters recognized by four minor sigma subunits of Escherichia coli RNA polymerase

Tomohiro Shimada, Kan Tanaka, Akira Ishihama

PLoS One. 2017; 12(6): e0179181. Published online 2017 Jun 30. doi: 10.1371/journal.pone.0179181

PMCID:: PMC5493296

Abstract Article PDF–4.7M

Select item 54545338.

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck

Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473

PMCID:: PMC5454533

Abstract Article PDF–1.5M

Select item 53865949.

Structural basis of transcription arrest by coliphage HK022 Nun in an Escherichia coli RNA polymerase elongation complex

Jin Young Kang, Paul Dominic B Olinares, James Chen, Elizabeth A Campbell, Arkady Mustaev, Brian T Chait, Max E Gottesman, Seth A Darst

eLife. 2017; 6: e25478. Published online 2017 Mar 20. doi: 10.7554/eLife.25478

PMCID:: PMC5386594

Abstract Article PDF–5.6M

Select item 530776210.

A novel point mutation in RpoB improves osmotolerance and succinic acid production in Escherichia coli

Mengyong Xiao, Xinna Zhu, Hongtao Xu, Jinlei Tang, Ru Liu, Changhao Bi, Feiyu Fan, Xueli Zhang

BMC Biotechnol. 2017; 17: 10. Published online 2017 Feb 13. doi: 10.1186/s12896-017-0337-6

PMCID:: PMC5307762

Abstract Article PDF–1.8M

Select item 491244011.

ppGpp binding to a site at the RNAP-DksA interface accounts for its dramatic effects on transcription initiation during the stringent response

Wilma Ross, Patricia Sanchez-Vazquez, Albert Y. Chen, Jeong-Hyun Lee, Hector L. Burgos, Richard L. Gourse

Mol Cell. Author manuscript; available in PMC 2017 Jun 16.

Published in final edited form as: Mol Cell. 2016 Jun 16; 62(6): 811–823. Published online 2016 May 26. doi: 10.1016/j.molcel.2016.04.029

PMCID:: PMC4912440

Abstract Article PDF–2.8M

Select item 467407612.

Regulation of Transcript Elongation

Georgiy A. Belogurov, Irina Artsimovitch

Annu Rev Microbiol. Author manuscript; available in PMC 2016 Oct 15.

Published in final edited form as: Annu Rev Microbiol. 2015 Oct 15; 69: 49–69. Published online 2015 Jun 24. doi: 10.1146/annurev-micro-091014-104047

PMCID:: PMC4674076

Abstract Article PDF–1.2M

Select item 461860513.

Suppression of capsule expression in Δlon strains of Escherichia coli by two novel rpoB mutations in concert with HNS: possible role for DNA bending at rcsA promoter

Shanmugaraja Meenakshi, M Hussain Munavar

Microbiologyopen. 2015 Oct; 4(5): 712–729. Published online 2015 Sep 25. doi: 10.1002/mbo3.268

PMCID:: PMC4618605

Abstract Article PDF–4.3M

Select item 447148114.

UvrD facilitates DNA repair by pulling RNA polymerase backwards

Vitaly Epshtein, Venu Kamarthapu, Katelyn McGary, Vladimir Svetlov, Beatrix Ueberheide, Sergey Proshkin, Alexander Mironov, Evgeny Nudler

Nature. Author manuscript; available in PMC 2015 Jun 18.

Published in final edited form as: Nature. 2014 Jan 16; 505(7483): 372–377. Published online 2014 Jan 8. doi: 10.1038/nature12928

PMCID:: PMC4471481

Abstract Article PDF–1.8M

Select item 412385515.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 361098516.

X-ray Crystal Structure of Escherichia coli RNA Polymerase σ⁷⁰ Holoenzyme

Katsuhiko S. Murakami

J Biol Chem. 2013 Mar 29; 288(13): 9126–9134. Published online 2013 Feb 6. doi: 10.1074/jbc.M112.430900

PMCID:: PMC3610985

Abstract Article PDF–2.3M

Select item 355493617.

Isolation and Characterization of RNA Polymerase rpoB Mutations That Alter Transcription Slippage during Elongation in Escherichia coli

Yan Ning Zhou, Lucyna Lubkowska, Monica Hui, Carolyn Court, Shuo Chen, Donald L. Court, Jeffrey Strathern, Ding Jun Jin, Mikhail Kashlev

J Biol Chem. 2013 Jan 25; 288(4): 2700–2710. Published online 2012 Dec 5. doi: 10.1074/jbc.M112.429464

PMCID:: PMC3554936

Abstract Article PDF–1.3M

Select item 328535518.

YajL, Prokaryotic Homolog of Parkinsonism-associated Protein DJ-1, Functions as a Covalent Chaperone for Thiol Proteome

Hai-Tuong Le, Valérie Gautier, Fatoum Kthiri, Abderrahim Malki, Nadia Messaoudi, Mouadh Mihoub, Ahmed Landoulsi, Young Jun An, Sun-Shin Cha, Gilbert Richarme

J Biol Chem. 2012 Feb 17; 287(8): 5861–5870. Published online 2011 Dec 7. doi: 10.1074/jbc.M111.299198