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Select item 42605961.

RecQ helicase and RecJ nuclease provide complementary functions to resect DNA for homologous recombination

Katsumi Morimatsu, Stephen C. Kowalczykowski

Proc Natl Acad Sci U S A. 2014 Dec 2; 111(48): E5133–E5142. Published online 2014 Nov 19. doi: 10.1073/pnas.1420009111

PMCID:: PMC4260596

Article PDF–1.5M

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Article PDF–1.1M

Select item 28818343.

RecQ Promotes Toxic Recombination in Cells Lacking Recombination-Intermediate-Removal Proteins

Daniel B. Magner, Matthew D. Blankschien, Jennifer A. Lee, Jeanine M. Pennington, James R. Lupski, Susan M. Rosenberg

Mol Cell. Author manuscript; available in PMC 2010 Jun 7.

Published in final edited form as: Mol Cell. 2007 Apr 27; 26(2): 273–286. doi: 10.1016/j.molcel.2007.03.012

PMCID:: PMC2881834

Article PDF–2.5M

Select item 28635564.

RecA4142 Causes SOS Constitutive Expression by Loading onto Reversed Replication Forks in Escherichia coli K-12

Jarukit Edward Long, Shawn C. Massoni, Steven J. Sandler

J Bacteriol. 2010 May; 192(10): 2575–2582. Published online 2010 Mar 19. doi: 10.1128/JB.01623-09

PMCID:: PMC2863556

Article PDF–1.1M

Select item 27157115.

Nucleotide Excision Repair Is a Predominant Mechanism for Processing Nitrofurazone-Induced DNA Damage in Escherichia coli

Katherine R. Ona, Charmain T. Courcelle, Justin Courcelle

J Bacteriol. 2009 Aug; 191(15): 4959–4965. Published online 2009 May 22. doi: 10.1128/JB.00495-09

PMCID:: PMC2715711

Article PDF–711K

Select item 26855326.

Reconstitution of initial steps of dsDNA break repair by the RecF pathway of E. coli

Naofumi Handa, Katsumi Morimatsu, Susan T. Lovett, Stephen C. Kowalczykowski

Genes Dev. 2009 May 15; 23(10): 1234–1245. doi: 10.1101/gad.1780709

PMCID:: PMC2685532

Article PDF–898K

Select item 26818947.

A Role for Single-Stranded Exonucleases in the Use of DNA as a Nutrient

Vyacheslav Palchevskiy, Steven E. Finkel

J Bacteriol. 2009 Jun; 191(11): 3712–3716. Published online 2009 Mar 27. doi: 10.1128/JB.01678-08

PMCID:: PMC2681894

Article PDF–227K

Select item 25195398.

UvrD and UvrD252 Counteract RecQ, RecJ, and RecFOR in a rep Mutant of Escherichia coli

Roxane Lestini, Bénédicte Michel

J Bacteriol. 2008 Sep; 190(17): 5995–6001. Published online 2008 Jun 20. doi: 10.1128/JB.00620-08

PMCID:: PMC2519539

Article PDF–144K

Select item 22237459.

Effects of Single-Strand DNases ExoI, RecJ, ExoVII, and SbcCD on Homologous Recombination of recBCD⁺ Strains of Escherichia coli and Roles of SbcB15 and XonA2 ExoI Mutant Enzymes

Brigitte Thoms, Inka Borchers, Wilfried Wackernagel

J Bacteriol. 2008 Jan; 190(1): 179–192. Published online 2007 Oct 26. doi: 10.1128/JB.01052-07

PMCID:: PMC2223745

Article PDF–367K

Select item 217531810.

Deficiency of RecA-dependent RecFOR and RecBCD pathways causes increased instability of the (GAA·TTC)_n sequence when GAA is the lagging strand template

Laura M. Pollard, Yogesh K. Chutake, Paul M. Rindler, Sanjay I. Bidichandani

Nucleic Acids Res. 2007 Nov; 35(20): 6884–6894. Published online 2007 Oct 11. doi: 10.1093/nar/gkm810

PMCID:: PMC2175318

Article PDF–2.5M

Select item 176543911.

RecA-independent recombination is efficient but limited by exonucleases

Bethany E. Dutra, Vincent A. Sutera, Jr., Susan T. Lovett

Proc Natl Acad Sci U S A. 2007 Jan 2; 104(1): 216–221. Published online 2006 Dec 20. doi: 10.1073/pnas.0608293104

PMCID:: PMC1765439

Article PDF–462K

Select item 168148112.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Article PDF–141K

Select item 156970813.

Exonuclease Requirements for Recombination of λ-Phage in recD Mutants of Escherichia coli

Damir Ðermić, Davor Zahradka, Mirjana Petranović

Genetics. 2006 Aug; 173(4): 2399–2402. doi: 10.1534/genetics.106.060426

PMCID:: PMC1569708

Article PDF–70K

Select item 153994914.

Genetic Evidence for the Requirement of RecA Loading Activity in SOS Induction after UV Irradiation in Escherichia coli

Ivana Ivančić-Baće, Ignacija Vlašić, Erika Salaj-Šmic, Krunoslav Brčić-Kostić

J Bacteriol. 2006 Jul; 188(14): 5024–5032. doi: 10.1128/JB.00130-06

PMCID:: PMC1539949

Article PDF–350K

Select item 152207415.

Regulon and promoter analysis of the E. coli heat-shock factor, σ³², reveals a multifaceted cellular response to heat stress

Gen Nonaka, Matthew Blankschien, Christophe Herman, Carol A. Gross, Virgil A. Rhodius

Genes Dev. 2006 Jul 1; 20(13): 1776–1789. doi: 10.1101/gad.1428206

PMCID:: PMC1522074

Article PDF–548K

Select item 148258216.

Nascent DNA processing by RecJ favors lesion repair over translesion synthesis at arrested replication forks in Escherichia coli

Charmain T. Courcelle, Kin-Hoe Chow, Andrew Casey, Justin Courcelle

Proc Natl Acad Sci U S A. 2006 Jun 13; 103(24): 9154–9159. Published online 2006 Jun 5. doi: 10.1073/pnas.0600785103

PMCID:: PMC1482582

Article PDF–1.0M

Select item 146245817.

RecFOR function is required for DNA repair and recombination in a RecA loading-deficient recB mutant of Escherichia coli.

Ivana Ivancić-Baće, Petra Peharec, Suncana Moslavac, Nikolina Skrobot, Erika Salaj-Smic, Krunoslav Brcić-Kostić

Genetics. 2003 Feb; 163(2): 485–494. doi: 10.1093/genetics/163.2.485

PMCID:: PMC1462458

Summary PDF–166K

Select item 145705218.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806