PMC Links for GEO Profiles (Select 35562712) - PMC

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Article PDF–1.1M

Select item 39929437.

Building the bacterial orisome: high affinity DnaA recognition plays a role in setting the conformation of oriC DNA

Gulpreet Kaur, Mansi P. Vora, Christopher A. Czerwonka, Tania A. Rozgaja, Julia E. Grimwade, Alan C. Leonard

Mol Microbiol. Author manuscript; available in PMC 2015 Mar 1.

Published in final edited form as: Mol Microbiol. 2014 Mar; 91(6): 1148–1163. Published online 2014 Feb 18. doi: 10.1111/mmi.12525

PMCID:: PMC3992943

Article PDF–2.8M

Select item 34303418.

Transcriptional Regulation of the ecp Operon by EcpR, IHF, and H-NS in Attaching and Effacing Escherichia coli

Verónica I. Martínez-Santos, Abraham Medrano-López, Zeus Saldaña, Jorge A. Girón, José L. Puente

J Bacteriol. 2012 Sep; 194(18): 5020–5033. doi: 10.1128/JB.00915-12

PMCID:: PMC3430341

Article PDF–1.5M

Select item 33338579.

Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12

Ana I. Prieto, Christina Kahramanoglou, Ruhi M. Ali, Gillian M. Fraser, Aswin S. N. Seshasayee, Nicholas M. Luscombe

Nucleic Acids Res. 2012 Apr; 40(8): 3524–3537. Published online 2011 Dec 16. doi: 10.1093/nar/gkr1236

PMCID:: PMC3333857

Article PDF–3.2M

Select item 277250010.

Protein and DNA Effectors Control the TraI Conjugative Helicase of Plasmid R1

Marta V. Sut, Sanja Mihajlovic, Silvia Lang, Christian J. Gruber, Ellen L. Zechner

J Bacteriol. 2009 Nov; 191(22): 6888–6899. Published online 2009 Sep 18. doi: 10.1128/JB.00920-09

PMCID:: PMC2772500

Article PDF–1.1M

Select item 233689811.

Formation of A Wrapped DNA-Protein Interface: Expermental Characterization and Analysis of the Large Contributions of Ions and Water to the Thermodynamics of Binding IHF to H′DNA

Kirk A. Vander Meulen, Ruth M. Saecker, M. Thomas Record, Jr.

J Mol Biol. Author manuscript; available in PMC 2009 Mar 14.

Published in final edited form as: J Mol Biol. 2008 Mar 14; 377(1): 9–27. Published online 2007 Dec 7. doi: 10.1016/j.jmb.2007.11.104

PMCID:: PMC2336898

Article PDF–4.5M

Select item 229217712.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Article PDF–1.0M

Select item 216859913.

TrwC-Mediated Site-Specific Recombination Is Controlled by Host Factors Altering Local DNA Topology

Carolina Elvira César, Matxalen Llosa

J Bacteriol. 2007 Dec; 189(24): 9037–9043. Published online 2007 Oct 5. doi: 10.1128/JB.01152-07

PMCID:: PMC2168599

Article PDF–408K

Select item 202566714.

Molecular Beacon-Equilibrium Cyclization Detection of DNA-Protein Complexes

Jason Vitko, Iulian Rujan, Lagu Androga, Ishita Mukerji, Philip H. Bolton

Biophys J. 2007 Nov 1; 93(9): 3210–3217. Published online 2007 Jul 13. doi: 10.1529/biophysj.106.097642

PMCID:: PMC2025667

Article PDF–433K

Select item 191947315.

Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli

Nicole A. Becker, Jason D. Kahn, L. James Maher, III

Nucleic Acids Res. 2007 Jun; 35(12): 3988–4000. Published online 2007 Jun 6. doi: 10.1093/nar/gkm419

PMCID:: PMC1919473

Article PDF–862K

Select item 189217116.

DNA Looping Generated by DNA Bending Protein IHF and the Two Domains of Lambda Integrase

Lina Moitoso De Vargas, Sunghoon Kim, Arthur Landy

Science. Author manuscript; available in PMC 2007 Jun 15.

Published in final edited form as: Science. 1989 Jun 23; 244(4911): 1457–1461. doi: 10.1126/science.2544029

PMCID:: PMC1892171

Article PDF–670K

Select item 186695617.

Architecture of the 99 bp DNA-Six-Protein Regulatory Complex of the λ att Site

Xingmin Sun, Dale F. Mierke, Tapan Biswas, Sang Yeol Lee, Arthur Landy, Marta Radman-Livaja

Mol Cell. Author manuscript; available in PMC 2007 May 10.

Published in final edited form as: Mol Cell. 2006 Nov 17; 24(4): 569–580. doi: 10.1016/j.molcel.2006.10.006

PMCID:: PMC1866956

Article PDF–1.3M

Select item 185585718.

Contributions of [4Fe-4S]-FNR and Integration Host Factor to fnr Transcriptional Regulation

Erin L. Mettert, Patricia J. Kiley

J Bacteriol. 2007 Apr; 189(8): 3036–3043. Published online 2007 Feb 9. doi: 10.1128/JB.00052-07

PMCID:: PMC1855857

Article PDF–230K

Select item 178409519.

Integration of regulatory signals through involvement of multiple global regulators: control of the Escherichia coli gltBDF operon by Lrp, IHF, Crp, and ArgR

Ligi Paul, Pankaj K Mishra, Robert M Blumenthal, Rowena G Matthews

BMC Microbiol. 2007; 7: 2. Published online 2007 Jan 18. doi: 10.1186/1471-2180-7-2

PMCID:: PMC1784095

Article PDF–2.1M

Select item 168148120.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049