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Items: 20

1.
Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli
Sang Woo Seo, Donghyuk Kim, Edward J. O'Brien, Richard Szubin, Bernhard O. Palsson
Nat Commun. 2015; 6: 7970. Published online 2015 Aug 10. doi: 10.1038/ncomms8970
PMCID:
PMC4918353
AbstractArticlePDF–653K
2.
Activators of the Glutamate-Dependent Acid Resistance System Alleviate Deleterious Effects of YidC Depletion in Escherichia coli
Zhong Yu, Martijn Bekker, Angela Tramonti, Gregory M. Cook, Peter van Ulsen, Dirk-Jan Scheffers, Joost Teixeira de Mattos, Daniela De Biase, Joen Luirink
J Bacteriol. 2011 Mar; 193(6): 1308–1316. Published online 2011 Jan 7. doi: 10.1128/JB.01209-10
PMCID:
PMC3067629
AbstractArticlePDF–962K
3.
Repression of btuB gene transcription in Escherichia coli by the GadX protein
Guang-Sheng Lei, Wan-Jr Syu, Po-Huang Liang, Kin-Fu Chak, Wensi S Hu, Shiau-Ting Hu
BMC Microbiol. 2011; 11: 33. Published online 2011 Feb 11. doi: 10.1186/1471-2180-11-33
PMCID:
PMC3050690
AbstractArticlePDF–1.0M
4.
RNase III Participates in GadY-Dependent Cleavage of the gadX-gadW mRNA
Jason A. Opdyke, Elizabeth M. Fozo, Matthew R. Hemm, Gisela Storz
J Mol Biol. Author manuscript; available in PMC 2012 Feb 11.
Published in final edited form as: J Mol Biol. 2011 Feb 11; 406(1): 29–43. Published online 2010 Dec 13. doi: 10.1016/j.jmb.2010.12.009
PMCID:
PMC3030618
AbstractArticlePDF–1.0M
5.
Indole is an inter-species biofilm signal mediated by SdiA
Jintae Lee, Arul Jayaraman, Thomas K Wood
BMC Microbiol. 2007; 7: 42. Published online 2007 May 18. doi: 10.1186/1471-2180-7-42
PMCID:
PMC1899176
AbstractArticlePDF–593K
6.
Mechanisms of Transcription Activation Exerted by GadX and GadW at the gadA and gadBC Gene Promoters of the Glutamate-Based Acid Resistance System in Escherichia coli
Angela Tramonti, Michele De Canio, Isabel Delany, Vincenzo Scarlato, Daniela De Biase
J Bacteriol. 2006 Dec; 188(23): 8118–8127. Published online 2006 Sep 15. doi: 10.1128/JB.01044-06
PMCID:
PMC1698215
AbstractArticlePDF–564K
7.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
8.
Growth Phase-Dependent Expression of Drug Exporters in Escherichia coli and Its Contribution to Drug Tolerance
Asuka Kobayashi, Hidetada Hirakawa, Takahiro Hirata, Kunihiko Nishino, Akihito Yamaguchi
J Bacteriol. 2006 Aug; 188(16): 5693–5703. doi: 10.1128/JB.00217-06
PMCID:
PMC1540079
AbstractArticlePDF–636K
9.
Loss of topoisomerase I function affects the RpoS-dependent and GAD systems of acid resistance in Escherichia coli
Natalee Stewart, Jingyang Feng, Xiaoping Liu, Devyani Chaudhuri, John W. Foster, Marc Drolet, Yuk-Ching Tse-Dinh
Microbiology (Reading) Author manuscript; available in PMC 2006 Aug 1.
Published in final edited form as: Microbiology (Reading). 2005 Aug; 151(Pt 8): 2783–2791. doi: 10.1099/mic.0.28022-0
PMCID:
PMC1361560
AbstractArticlePDF–594K
10.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
11.
GadY, a Small-RNA Regulator of Acid Response Genes in Escherichia coli
Jason A. Opdyke, Ju-Gyeong Kang, Gisela Storz
J Bacteriol. 2004 Oct; 186(20): 6698–6705. doi: 10.1128/JB.186.20.6698-6705.2004
PMCID:
PMC522195
AbstractArticlePDF–253K
12.
The Small Noncoding DsrA RNA Is an Acid Resistance Regulator in Escherichia coli
Richard A. Lease, Dorie Smith, Kathleen McDonough, Marlene Belfort
J Bacteriol. 2004 Sep; 186(18): 6179–6185. doi: 10.1128/JB.186.18.6179-6185.2004
PMCID:
PMC515158
AbstractArticlePDF–430K
13.
The XylS/AraC family of regulators.
M T Gallegos, C Michán, J L Ramos
Nucleic Acids Res. 1993 Feb 25; 21(4): 807–810. doi: 10.1093/nar/21.4.807
PMCID:
PMC309210
SummaryPage BrowsePDF–840K
14.
Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes.
H J Sofia, V Burland, D L Daniels, G Plunkett, 3rd, F R Blattner
Nucleic Acids Res. 1994 Jul 11; 22(13): 2576–2586. doi: 10.1093/nar/22.13.2576
PMCID:
PMC308212
SummaryPage BrowsePDF–2.3M
15.
pH-Dependent Modulation of Cyclic AMP Levels and GadW-Dependent Repression of RpoS Affect Synthesis of the GadX Regulator and Escherichia coli Acid Resistance
Zhuo Ma, Hope Richard, John W. Foster
J Bacteriol. 2003 Dec; 185(23): 6852–6859. doi: 10.1128/JB.185.23.6852-6859.2003
PMCID:
PMC262709
AbstractArticlePDF–728K
16.
Arac/XylS family of transcriptional regulators.
M T Gallegos, R Schleif, A Bairoch, K Hofmann, J L Ramos
Microbiol Mol Biol Rev. 1997 Dec; 61(4): 393–410. doi: 10.1128/mmbr.61.4.393-410.1997
PMCID:
PMC232617
SummaryPDF–702K
17.
Transcriptional Expression of Escherichia coli Glutamate-Dependent Acid Resistance Genes gadA and gadBC in an hns rpoS Mutant
Scott R. Waterman, P. L. C. Small
J Bacteriol. 2003 Aug; 185(15): 4644–4647. doi: 10.1128/JB.185.15.4644-4647.2003
PMCID:
PMC165754
AbstractArticlePDF–146K
18.
Genes of the GadX-GadW Regulon in Escherichia coli
Don L. Tucker, Nancy Tucker, Zhuo Ma, John W. Foster, Regina L. Miranda, Paul S. Cohen, Tyrrell Conway
J Bacteriol. 2003 May; 185(10): 3190–3201. doi: 10.1128/JB.185.10.3190-3201.2003
PMCID:
PMC154079
AbstractArticlePDF–2.7M
19.
Collaborative Regulation of Escherichia coli Glutamate-Dependent Acid Resistance by Two AraC-Like Regulators, GadX and GadW (YhiW)
Zhuo Ma, Hope Richard, Don L. Tucker, Tyrrell Conway, John W. Foster
J Bacteriol. 2002 Dec; 184(24): 7001–7012. doi: 10.1128/JB.184.24.7001-7012.2002
PMCID:
PMC135476
AbstractArticlePDF–1.3M
20.
Functional Characterization and Regulation of gadX, a Gene Encoding an AraC/XylS-Like Transcriptional Activator of the Escherichia coli Glutamic Acid Decarboxylase System
Angela Tramonti, Paolo Visca, Michele De Canio, Maurizio Falconi, Daniela De Biase
J Bacteriol. 2002 May; 184(10): 2603–2613. doi: 10.1128/JB.184.10.2603-2613.2002
PMCID:
PMC135039
AbstractArticlePDF–1.3M

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