PMC Links for GEO Profiles (Select 35559913) - PMC

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Items: 20

Select item 83151801.

Extreme Acid Modulates Fitness Trade-Offs of Multidrug Efflux Pumps MdtEF-TolC and AcrAB-TolC in Escherichia coli K-12

Samantha H. Schaffner, Abigail V. Lee, Minh T. N. Pham, Beimnet B. Kassaye, Haofan Li, Sheetal Tallada, Cassandra Lis, Mark Lang, Yangyang Liu, Nafeez Ahmed, Logan G. Galbraith, Jeremy P. Moore, Katarina M. Bischof, Chelsea C. Menke, Joan L. Slonczewski

Appl Environ Microbiol. 2021 Aug; 87(16): e00724-21. Prepublished online 2021 Jun 4. Published online 2021 Jul 27. doi: 10.1128/AEM.00724-21

PMCID:: PMC8315180

Abstract Article PDF–1.3M

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 23239523.

Prediction of lipoprotein signal peptides in Gram-negative bacteria

Agnieszka S. Juncker, Hanni Willenbrock, Gunnar von Heijne, Søren Brunak, Henrik Nielsen, Anders Krogh

Protein Sci. 2003 Aug; 12(8): 1652–1662. doi: 10.1110/ps.0303703

PMCID:: PMC2323952

Abstract Article PDF–330K

Select item 16814814.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 15400945.

N-Acetyl-d-Glucosamine Induces the Expression of Multidrug Exporter Genes, mdtEF, via Catabolite Activation in Escherichia coli

Hidetada Hirakawa, Yoshihiko Inazumi, Yasuko Senda, Asuka Kobayashi, Takahiro Hirata, Kunihiko Nishino, Akihito Yamaguchi

J Bacteriol. 2006 Aug; 188(16): 5851–5858. doi: 10.1128/JB.00301-06

PMCID:: PMC1540094

Abstract Article PDF–467K

Select item 15400796.

Growth Phase-Dependent Expression of Drug Exporters in Escherichia coli and Its Contribution to Drug Tolerance

Asuka Kobayashi, Hidetada Hirakawa, Takahiro Hirata, Kunihiko Nishino, Akihito Yamaguchi

J Bacteriol. 2006 Aug; 188(16): 5693–5703. doi: 10.1128/JB.00217-06

PMCID:: PMC1540079

Abstract Article PDF–636K

Select item 13252007.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 3444128.

Role of Histone-Like Protein H-NS in Multidrug Resistance of Escherichia coli

Kunihiko Nishino, Akihito Yamaguchi

J Bacteriol. 2004 Mar; 186(5): 1423–1429. doi: 10.1128/JB.186.5.1423-1429.2004

PMCID:: PMC344412

Abstract Article PDF–143K

Select item 3082129.

Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes.

H J Sofia, V Burland, D L Daniels, G Plunkett, 3rd, F R Blattner

Nucleic Acids Res. 1994 Jul 11; 22(13): 2576–2586. doi: 10.1093/nar/22.13.2576

PMCID:: PMC308212

Summary Page Browse PDF–2.3M

Select item 19375510.

Chimeric Analysis of AcrA Function Reveals the Importance of Its C-Terminal Domain in Its Interaction with the AcrB Multidrug Efflux Pump

Christopher A. Elkins, Hiroshi Nikaido

J Bacteriol. 2003 Sep; 185(18): 5349–5356. doi: 10.1128/JB.185.18.5349-5356.2003

PMCID:: PMC193755

Abstract Article PDF–351K

Select item 18261711.

Roles of TolC-Dependent Multidrug Transporters of Escherichia coli in Resistance to β-Lactams

Kunihiko Nishino, Junko Yamada, Hidetada Hirakawa, Takahiro Hirata, Akihito Yamaguchi

Antimicrob Agents Chemother. 2003 Sep; 47(9): 3030–3033. doi: 10.1128/AAC.47.9.3030-3033.2003

PMCID:: PMC182617

Abstract Article PDF–60K

Select item 15193312.

Escherichia coli Gene Expression Responsive to Levels of the Response Regulator EvgA

Nobuhisa Masuda, George M. Church

J Bacteriol. 2002 Nov; 184(22): 6225–6234. doi: 10.1128/JB.184.22.6225-6234.2002

PMCID:: PMC151933

Abstract Article PDF–883K

Select item 15013713.

Comprehensive Studies of Drug Resistance Mediated by Overexpression of Response Regulators of Two-Component Signal Transduction Systems in Escherichia coli

Hidetada Hirakawa, Kunihiko Nishino, Takahiro Hirata, Akihito Yamaguchi

J Bacteriol. 2003 Mar; 185(6): 1851–1856. doi: 10.1128/JB.185.6.1851-1856.2003

PMCID:: PMC150137

Abstract Article PDF–71K

Select item 13496014.

EvgA of the Two-Component Signal Transduction System Modulates Production of the YhiUV Multidrug Transporter in Escherichia coli

Kunihiko Nishino, Akihito Yamaguchi

J Bacteriol. 2002 Apr; 184(8): 2319–2323. doi: 10.1128/JB.184.8.2319-2323.2002

PMCID:: PMC134960

Abstract Article PDF–274K

Select item 11135715.

Entry into and Release of Solvents by Escherichia coli in an Organic-Aqueous Two-Liquid-Phase System and Substrate Specificity of the AcrAB-TolC Solvent-Extruding Pump

Norihiko Tsukagoshi, Rikizo Aono

J Bacteriol. 2000 Sep; 182(17): 4803–4810. doi: 10.1128/jb.182.17.4803-4810.2000

PMCID:: PMC111357

Abstract Article PDF–115K

Select item 10771416.

Identification of Conserved, RpoS-Dependent Stationary-Phase Genes of Escherichia coli

Herb E. Schellhorn, Jonathon P. Audia, Linda I. C. Wei, Lily Chang

J Bacteriol. 1998 Dec; 180(23): 6283–6291. doi: 10.1128/jb.180.23.6283-6291.1998

PMCID:: PMC107714

Abstract Article PDF–657K

Select item 10193717.

Cross-Linked Complex between Oligomeric Periplasmic Lipoprotein AcrA and the Inner-Membrane-Associated Multidrug Efflux Pump AcrB from Escherichia coli

Helen I. Zgurskaya, Hiroshi Nikaido

J Bacteriol. 2000 Aug; 182(15): 4264–4267. doi: 10.1128/jb.182.15.4264-4267.2000

PMCID:: PMC101937

Abstract Article PDF–443K

Select item 9965618.

Analysis of a Complete Library of Putative Drug Transporter Genes in Escherichia coli

Kunihiko Nishino, Akihito Yamaguchi

J Bacteriol. 2001 Oct; 183(20): 5803–5812. doi: 10.1128/JB.183.20.5803-5812.2001

PMCID:: PMC99656

Abstract Article PDF–536K

Select item 9502119.

Overexpression of the Response Regulator evgA of the Two-Component Signal Transduction System Modulates Multidrug Resistance Conferred by Multidrug Resistance Transporters

Kunihiko Nishino, Akihito Yamaguchi

J Bacteriol. 2001 Feb; 183(4): 1455–1458. doi: 10.1128/JB.183.4.1455-1458.2001

PMCID:: PMC95021

Abstract Article PDF–428K

Select item 9043520.

Antibiotic Susceptibility Profiles of Escherichia coli Strains Lacking Multidrug Efflux Pump Genes

Mark C. Sulavik, Chad Houseweart, Christina Cramer, Nilofer Jiwani, Nicholas Murgolo, Jonathan Greene, Beth DiDomenico, Karen Joy Shaw, George H. Miller, Roberta Hare, George Shimer

Antimicrob Agents Chemother. 2001 Apr; 45(4): 1126–1136. doi: 10.1128/AAC.45.4.1126-1136.2001