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Items: 20

Select item 88465871.

A DCL3 dicing code within Pol IV-RDR2 transcripts diversifies the siRNA pool guiding RNA-directed DNA methylation

Andrew Loffer, Jasleen Singh, Akihito Fukudome, Vibhor Mishra, Feng Wang, Craig S Pikaard

eLife. 2022; 11: e73260. Published online 2022 Jan 31. doi: 10.7554/eLife.73260

PMCID:: PMC8846587

Abstract Article PDF–8.2M

Select item 86827262.

Mechanism of siRNA production by a plant Dicer-RNA complex in dicing-competent conformation

Qian Wang, Yan Xue, Laixing Zhang, Zhenhui Zhong, Suhua Feng, Changshi Wang, Lifan Xiao, Zhenlin Yang, C. Jake Harris, Zhe Wu, Jixian Zhai, Maojun Yang, Sisi Li, Steven E. Jacobsen, Jiamu Du

Science. Author manuscript; available in PMC 2022 May 26.

Published in final edited form as: Science. 2021 Nov 26; 374(6571): 1152–1157. Published online 2021 Oct 14. doi: 10.1126/science.abl4546

PMCID:: PMC8682726

Abstract Article PDF–1.7M

Select item 66980593.

Reaction mechanisms of Pol IV, RDR2 and DCL3 drive RNA channeling in the siRNA-directed DNA methylation pathway

Jasleen Singh, Vibhor Mishra, Feng Wang, Hsiao-Yun Huang, Craig S. Pikaard

Mol Cell. Author manuscript; available in PMC 2020 Aug 8.

Published in final edited form as: Mol Cell. 2019 Aug 8; 75(3): 576–589.e5. doi: 10.1016/j.molcel.2019.07.008

PMCID:: PMC6698059

Abstract Article PDF–2.7M

Select item 60530154.

DAWDLE Interacts with DICER-LIKE Proteins to Mediate Small RNA Biogenesis

Shuxin Zhang, Yongchao Dou, Shengjun Li, Guodong Ren, David Chevalier, Chi Zhang, Bin Yu

Plant Physiol. 2018 Jul; 177(3): 1142–1151. Published online 2018 May 21. doi: 10.1104/pp.18.00354

PMCID:: PMC6053015

Abstract Article PDF–1.2M

Select item 49776775.

Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation

Kaushik Panda, Lexiang Ji, Drexel A. Neumann, Josquin Daron, Robert J. Schmitz, R. Keith Slotkin

Genome Biol. 2016; 17: 170. Published online 2016 Aug 9. doi: 10.1186/s13059-016-1032-y

PMCID:: PMC4977677

Abstract Article PDF–3.7M

Select item 47168386.

Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis

Todd Blevins, Ram Podicheti, Vibhor Mishra, Michelle Marasco, Jing Wang, Doug Rusch, Haixu Tang, Craig S Pikaard

eLife. 2015; 4: e09591. Published online 2015 Oct 2. doi: 10.7554/eLife.09591

PMCID:: PMC4716838

Abstract Article PDF–4.2M

Select item 44982097.

Functional and Genetic Analysis Identify a Role for Arabidopsis ARGONAUTE5 in Antiviral RNA Silencing

Chantal Brosseau, Peter Moffett

Plant Cell. 2015 Jun; 27(6): 1742–1754. Published online 2015 May 28. doi: 10.1105/tpc.15.00264

PMCID:: PMC4498209

Abstract Article PDF–960K

Select item 42603548.

SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis

Yong-Feng Han, Kun Dou, Ze-Yang Ma, Su-Wei Zhang, Huan-Wei Huang, Lin Li, Tao Cai, She Chen, Jian-Kang Zhu, Xin-Jian He

Cell Res. 2014 Dec; 24(12): 1445–1465. Published online 2014 Nov 25. doi: 10.1038/cr.2014.156

PMCID:: PMC4260354

Abstract Article PDF–3.6M

Select item 42562069.

PRL1, an RNA-Binding Protein, Positively Regulates the Accumulation of miRNAs and siRNAs in Arabidopsis

Shuxin Zhang, Yuhui Liu, Bin Yu

PLoS Genet. 2014 Dec; 10(12): e1004841. Published online 2014 Dec 4. doi: 10.1371/journal.pgen.1004841

PMCID:: PMC4256206

Abstract Article PDF–1.2M

Select item 395809610.

Arabidopsis Double-Stranded RNA Binding Protein DRB3 Participates in Methylation-Mediated Defense against Geminiviruses

Priya Raja, Jamie N. Jackel, Sizhun Li, Isaac M. Heard, David M. Bisaro

J Virol. 2014 Mar; 88(5): 2611–2622. doi: 10.1128/JVI.02305-13

PMCID:: PMC3958096

Abstract Article PDF–4.8M

Select item 394644811.

The Hypervariable Amino-Terminus of P1 Protease Modulates Potyviral Replication and Host Defense Responses

Fabio Pasin, Carmen Simón-Mateo, Juan Antonio García

PLoS Pathog. 2014 Mar; 10(3): e1003985. Published online 2014 Mar 6. doi: 10.1371/journal.ppat.1003985

PMCID:: PMC3946448

Abstract Article PDF–1.8M

Select item 391957212.

Distinct substrate specificities of Arabidopsis DCL3 and DCL4

Hideaki Nagano, Akihito Fukudome, Akihiro Hiraguri, Hiromitsu Moriyama, Toshiyuki Fukuhara

Nucleic Acids Res. 2014 Feb; 42(3): 1845–1856. Published online 2013 Nov 7. doi: 10.1093/nar/gkt1077

PMCID:: PMC3919572

Abstract Article PDF–1.8M

Select item 346704713.

IBM1, a JmjC domain-containing histone demethylase, is involved in the regulation of RNA-directed DNA methylation through the epigenetic control of RDR2 and DCL3 expression in Arabidopsis

Di Fan, Yan Dai, Xuncheng Wang, Zhenjie Wang, Hang He, Hongchun Yang, Ying Cao, Xing Wang Deng, Ligeng Ma

Nucleic Acids Res. 2012 Oct; 40(18): 8905–8916. Published online 2012 Jul 5. doi: 10.1093/nar/gks647

PMCID:: PMC3467047

Abstract Article PDF–6.2M

Select item 332949914.

The splicing factor SR45 affects the RNA-directed DNA methylation pathway in Arabidopsis

Israel Ausin, Maxim V.C. Greenberg, Carey Fei Li, Steven E. Jacobsen

Epigenetics. 2012 Jan 1; 7(1): 29–33. doi: 10.4161/epi.7.1.18782

PMCID:: PMC3329499

Abstract Article PDF–1.3M

Select item 268087315.

ARGONAUTE 1 homeostasis invokes the coordinate action of the microRNA and siRNA pathways

Allison C Mallory, Hervé Vaucheret

EMBO Rep. 2009 May; 10(5): 521–526. Published online 2009 Apr 3. doi: 10.1038/embor.2009.32

PMCID:: PMC2680873

Abstract Article PDF–403K

Select item 196454616.

Nuclear gene silencing directs reception of long-distance mRNA silencing in Arabidopsis

C. A. Brosnan, N. Mitter, M. Christie, N. A. Smith, P. M. Waterhouse, B. J. Carroll

Proc Natl Acad Sci U S A. 2007 Sep 11; 104(37): 14741–14746. Published online 2007 Sep 4. doi: 10.1073/pnas.0706701104

PMCID:: PMC1964546

Abstract Article PDF–758K

Select item 189459817.

DICER-LIKE 1 and DICER-LIKE 3 Redundantly Act to Promote Flowering via Repression of FLOWERING LOCUS C in Arabidopsis thaliana

Robert J. Schmitz, Lewis Hong, Kathleen E. Fitzpatrick, Richard M. Amasino

Genetics. 2007 Jun; 176(2): 1359–1362. doi: 10.1534/genetics.107.070649

PMCID:: PMC1894598

Abstract Article PDF–866K

Select item 152317918.

An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs

Nicolas Bouché, Dominique Lauressergues, Virginie Gasciolli, Hervé Vaucheret

EMBO J. 2006 Jul 26; 25(14): 3347–3356. Published online 2006 Jun 29. doi: 10.1038/sj.emboj.7601217

PMCID:: PMC1523179

Abstract Article PDF–369K

Select item 148892019.

MicroRNA-Targeted and Small Interfering RNA–Mediated mRNA Degradation Is Regulated by Argonaute, Dicer, and RNA-Dependent RNA Polymerase in Arabidopsis

Michael Ronemus, Matthew W. Vaughn, Robert A. Martienssen

Plant Cell. 2006 Jul; 18(7): 1559–1574. doi: 10.1105/tpc.106.042127

PMCID:: PMC1488920

Abstract Article PDF–608K

Select item 35066720.

Genetic and Functional Diversification of Small RNA Pathways in Plants

Zhixin Xie, Lisa K Johansen, Adam M Gustafson, Kristin D Kasschau, Andrew D Lellis, Daniel Zilberman, Steven E Jacobsen, James C Carrington

PLoS Biol. 2004 May; 2(5): e104. Published online 2004 Feb 24. doi: 10.1371/journal.pbio.0020104

PMCID:: PMC350667

Abstract Article PDF–411K

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