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Items: 1 to 20 of 175

1.
Genomic context-dependent histone H3K36 methylation by three Drosophila methyltransferases and implications for dedicated chromatin readers
Muhunden Jayakrishnan, Magdalena Havlová, Václav Veverka, Catherine Regnard, Peter B Becker
Nucleic Acids Res. 2024 Jul 22; 52(13): 7627–7649. Published online 2024 May 30. doi: 10.1093/nar/gkae449
PMCID:
PMC11260483
ArticlePDF–2.6M
2.
Transient chromatin decompaction at the start of D. melanogaster male embryonic germline development
Yi-Ru Li, Li Bin Ling, Angel Chao, Sebastian D Fugmann, Shu Yuan Yang
Life Sci Alliance. 2024 Oct; 7(10): e202302401. Published online 2024 Jul 11. doi: 10.26508/lsa.202302401
PMCID:
PMC11239976
ArticlePDF–3.4M
3.
Genome organization regulates nuclear pore complex formation and promotes differentiation during Drosophila oogenesis
Noor M. Kotb, Gulay Ulukaya, Ankita Chavan, Son C. Nguyen, Lydia Proskauer, Eric F. Joyce, Dan Hasson, Madhav Jagannathan, Prashanth Rangan
Genes Dev. 2024 May 1; 38(9-10): 436–454. doi: 10.1101/gad.351402.123
PMCID:
PMC11216175
ArticlePDF–31M
4.
Protecting against promiscuity: the regulatory role of insulators
P. K. Geyer, I. Clark
Cell Mol Life Sci. 2002 Dec; 59(12): 2112–2127. doi: 10.1007/s000180200011
PMCID:
PMC11146130
ArticlePDF–237K
5.
Expanding the roles of chromatin insulators in nuclear architecture, chromatin organization and genome function
Todd Schoborg, Mariano Labrador
Cell Mol Life Sci. 2014 Nov; 71(21): 4089–4113. Published online 2014 Jul 11. doi: 10.1007/s00018-014-1672-6
PMCID:
PMC11113341
ArticlePDF–887K
6.
Enhancer–promoter interactions become more instructive in the transition from cell-fate specification to tissue differentiation
Tim Pollex, Adam Rabinowitz, Maria Cristina Gambetta, Raquel Marco-Ferreres, Rebecca R. Viales, Aleksander Jankowski, Christoph Schaub, Eileen E. M. Furlong
Nat Genet. 2024; 56(4): 686–696. Published online 2024 Mar 11. doi: 10.1038/s41588-024-01678-x
PMCID:
PMC11018526
ArticlePDF–7.7M
7.
Developmental and Housekeeping Genes: Two Types of Genetic Organization in the Drosophila Genome
Igor Zhimulev, Tatyana Vatolina, Victor Levitsky, Anton Tsukanov
Int J Mol Sci. 2024 Apr; 25(7): 4068. Published online 2024 Apr 6. doi: 10.3390/ijms25074068
PMCID:
PMC11012173
ArticlePDF–5.7M
8.
A single-cell atlas of Drosophila trachea reveals glycosylation-mediated Notch signaling in cell fate specification
Yue Li, Tianfeng Lu, Pengzhen Dong, Jian Chen, Qiang Zhao, Yuying Wang, Tianheng Xiao, Honggang Wu, Quanyi Zhao, Hai Huang
Nat Commun. 2024; 15: 2019. Published online 2024 Mar 6. doi: 10.1038/s41467-024-46455-w
PMCID:
PMC10917797
ArticlePDF–5.3M
9.
Multiple Roles of dXNP and dADD1—Drosophila Orthologs of ATRX Chromatin Remodeler
Larisa Melnikova, Anton Golovnin
Int J Mol Sci. 2023 Nov; 24(22): 16486. Published online 2023 Nov 18. doi: 10.3390/ijms242216486
PMCID:
PMC10671109
ArticlePDF–2.5M
10.
3D chromatin interactions involving Drosophila insulators are infrequent but preferential and arise before TADs and transcription
Olivier Messina, Flavien Raynal, Julian Gurgo, Jean-Bernard Fiche, Vera Pancaldi, Marcelo Nollmann
Nat Commun. 2023; 14: 6678. Published online 2023 Oct 21. doi: 10.1038/s41467-023-42485-y
PMCID:
PMC10590426
ArticlePDF–3.6M
11.
Polycomb Recruiters Inside and Outside of the Repressed Domains
Maksim Erokhin, Vladic Mogila, Dmitry Lomaev, Darya Chetverina
Int J Mol Sci. 2023 Jul; 24(14): 11394. Published online 2023 Jul 13. doi: 10.3390/ijms241411394
PMCID:
PMC10379775
ArticlePDF–3.2M
12.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
ArticlePDF–3.2M
13.
A large-scale RNAi screen reveals that mitochondrial function is important for meiotic chromosome organization in oocytes
Karen Jule Nieken, Kathryn O’Brien, Alexander McDonnell, Liudmila Zhaunova, Hiroyuki Ohkura
Chromosoma. 2023; 132(1): 1–18. Published online 2023 Jan 17. doi: 10.1007/s00412-023-00784-9
PMCID:
PMC9981535
ArticlePDF–3.4M
14.
Proximity labeling reveals a new in vivo network of interactors for the histone demethylase KDM5
Matanel Yheskel, Simone Sidoli, Julie Secombe
Epigenetics Chromatin. 2023; 16: 8. Published online 2023 Feb 18. doi: 10.1186/s13072-023-00481-y
PMCID:
PMC9938590
ArticlePDF–4.8M
15.
CTCF, BEAF-32, and CP190 are not required for the establishment of TADs in early Drosophila embryos but have locus-specific roles
Gabriel R. Cavalheiro, Charles Girardot, Rebecca R. Viales, Tim Pollex, T. B. Ngoc Cao, Perrine Lacour, Songjie Feng, Adam Rabinowitz, Eileen E. M. Furlong
Sci Adv. 2023 Feb; 9(5): eade1085. Published online 2023 Feb 3. doi: 10.1126/sciadv.ade1085
PMCID:
PMC9897672
ArticlePDF–2.5M
16.
The chromatin factor ROW cooperates with BEAF‐32 in regulating long‐range inducible genes
Neta Herman, Sebastian Kadener, Sagiv Shifman
EMBO Rep. 2022 Dec; 23(12): e54720. Published online 2022 Oct 17. doi: 10.15252/embr.202254720
PMCID:
PMC9724677
ArticlePDF–2.3M
17.
The Drosophila BEAF insulator protein interacts with the polybromo subunit of the PBAP chromatin remodeling complex
J Keller McKowen, Satya V S P Avva, Mukesh Maharjan, Fabiana M Duarte, Jacob M Tome, Julius Judd, Jamie L Wood, Sunday Negedu, Yunkai Dong, John T Lis, Craig M Hart
G3 (Bethesda) 2022 Nov; 12(11): jkac223. Published online 2022 Aug 27. doi: 10.1093/g3journal/jkac223
PMCID:
PMC9635645
ArticlePDF–1.8M
18.
Essential role of Cp190 in physical and regulatory boundary formation
Anjali Kaushal, Julien Dorier, Bihan Wang, Giriram Mohana, Michael Taschner, Pascal Cousin, Patrice Waridel, Christian Iseli, Anastasiia Semenova, Simon Restrepo, Nicolas Guex, Erez Lieberman Aiden, Maria Cristina Gambetta
Sci Adv. 2022 May; 8(19): eabl8834. Published online 2022 May 13. doi: 10.1126/sciadv.abl8834
PMCID:
PMC9106302
ArticlePDF–8.3M
19.
The role of insulators and transcription in 3D chromatin organization of flies
Keerthi T. Chathoth, Liudmila A. Mikheeva, Gilles Crevel, Jareth C. Wolfe, Ioni Hunter, Saskia Beckett-Doyle, Sue Cotterill, Hongsheng Dai, Andrew Harrison, Nicolae Radu Zabet
Genome Res. 2022 Apr; 32(4): 682–698. doi: 10.1101/gr.275809.121
PMCID:
PMC8997359
ArticlePDF–13M
20.
Maintenance of mitochondrial integrity in midbrain dopaminergic neurons governed by a conserved developmental transcription factor
Federico Miozzo, Eva P. Valencia-Alarcón, Luca Stickley, Michaëla Majcin Dorcikova, Francesco Petrelli, Damla Tas, Nicolas Loncle, Irina Nikonenko, Peter Bou Dib, Emi Nagoshi
Nat Commun. 2022; 13: 1426. Published online 2022 Mar 17. doi: 10.1038/s41467-022-29075-0
PMCID:
PMC8931002
ArticlePDF–6.9M

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