PMC Links for GEO Profiles (Select 34984170) - PMC

Select item 107219291.

Cytoglobin regulates NO-dependent cilia motility and organ laterality during development

Elizabeth R. Rochon, Jianmin Xue, Manush Sayd Mohammed, Caroline Smith, Anders Hay-Schmidt, Anthony W. DeMartino, Adam Clark, Qinzi Xu, Cecilia W. Lo, Michael Tsang, Jesus Tejero, Mark T. Gladwin, Paola Corti

Nat Commun. 2023; 14: 8333. Published online 2023 Dec 14. doi: 10.1038/s41467-023-43544-0

PMCID:: PMC10721929

Abstract Article PDF–4.0M

Select item 88847262.

Allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants

Richard J White, Eirinn Mackay, Stephen W Wilson, Elisabeth M Busch-Nentwich

eLife. 2022; 11: e72825. Published online 2022 Feb 17. doi: 10.7554/eLife.72825

PMCID:: PMC8884726

Abstract Article PDF–4.2M

Select item 84833233.

Hypoxic and nitrosative stress conditions modulate expression of myoglobin genes in a carcinogenic hepatobiliary trematode, Clonorchis sinensis

Seon-Hee Kim, Dongki Yang, Young-An Bae

PLoS Negl Trop Dis. 2021 Sep; 15(9): e0009811. Published online 2021 Sep 30. doi: 10.1371/journal.pntd.0009811

PMCID:: PMC8483323

Abstract Article PDF–4.0M

Select item 70474094.

Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility

Hyung Joo Lee, Yiran Hou, Yujie Chen, Zea Z. Dailey, Aiyana Riddihough, Hyo Sik Jang, Ting Wang, Stephen L. Johnson

Genome Biol. 2020; 21: 52. Published online 2020 Feb 27. doi: 10.1186/s13059-020-1948-0

PMCID:: PMC7047409

Abstract Article PDF–4.5M

Select item 66576985.

The zebrafish Cytochrome b₅/Cytochrome b₅ reductase/NADH system efficiently reduces Cytoglobins 1 and 2 – Conserved activity of Cytochrome b₅/Cytochrome b₅ reductases during vertebrate evolution.

Matthew B. Amdahl, Elin E. Petersen, Kaitlin Bocian, Stefan J. Kaliszuk, Anthony W. DeMartino, Sagarika Tiwari, Courtney E. Sparacino-Watkins, Paola Corti, Jason J. Rose, Mark T. Gladwin, Angela Fago, Jesús Tejero

Biochemistry. Author manuscript; available in PMC 2020 Jul 23.

Published in final edited form as: Biochemistry. 2019 Jul 23; 58(29): 3212–3223. Published online 2019 Jul 10. doi: 10.1021/acs.biochem.9b00406

PMCID:: PMC6657698

Abstract Article PDF–1.7M

Select item 64960666.

Hepatotoxicity Induced by Isoniazid-Lipopolysaccharide through Endoplasmic Reticulum Stress, Autophagy, and Apoptosis Pathways in Zebrafish

Yun Zhang, Juan Cen, Zhili Jia, Chung-Der Hsiao, Qing Xia, Xue Wang, Xiqiang Chen, Rongchun Wang, Zhenzhou Jiang, Luyong Zhang, Kechun Liu

Antimicrob Agents Chemother. 2019 May; 63(5): e01639-18. Prepublished online 2019 Mar 11. Published online 2019 Apr 25. doi: 10.1128/AAC.01639-18

Correction in:: Antimicrob Agents Chemother. 2019 Jul; 63(7): e00936-19.

PMCID:: PMC6496066

Abstract Article PDF–4.7M

Select item 55553787.

Efficient reduction of vertebrate Cytoglobins by the Cytochrome b₅/Cytochrome b₅ reductase/NADH system

Matthew B. Amdahl, Courtney E. Sparacino-Watkins, Paola Corti, Mark T. Gladwin, Jesús Tejero

Biochemistry. Author manuscript; available in PMC 2018 Aug 1.

Published in final edited form as: Biochemistry. 2017 Aug 1; 56(30): 3993–4004. Published online 2017 Jul 19. doi: 10.1021/acs.biochem.7b00224

PMCID:: PMC5555378

Abstract Article PDF–1.5M

Select item 51753708.

Function-driven discovery of disease genes in zebrafish using an integrated genomics big data resource

Hongseok Shim, Ji Hyun Kim, Chan Yeong Kim, Sohyun Hwang, Hyojin Kim, Sunmo Yang, Ji Eun Lee, Insuk Lee

Nucleic Acids Res. 2016 Nov 16; 44(20): 9611–9623. Published online 2016 Oct 5. doi: 10.1093/nar/gkw897

PMCID:: PMC5175370

Abstract Article PDF–4.7M

Select item 49687129.

Globin X is a six-coordinate globin that reduces nitrite to nitric oxide in fish red blood cells

Paola Corti, Jianmin Xue, Jesús Tejero, Nadeem Wajih, Ming Sun, Donna B. Stolz, Michael Tsang, Daniel B. Kim-Shapiro, Mark T. Gladwin

Proc Natl Acad Sci U S A. 2016 Jul 26; 113(30): 8538–8543. Published online 2016 Jul 12. doi: 10.1073/pnas.1522670113

PMCID:: PMC4968712

Abstract Article PDF–1.3M

Select item 318322810.

A screen for hoxb1-regulated genes identifies ppp1r14al as a regulator of the rhombomere 4 Fgf-signaling center

Seong-Kyu Choe, Xiaolan Zhang, Nicolas Hirsch, Juerg Straubhaar, Charles G Sagerström

Dev Biol. Author manuscript; available in PMC 2012 Oct 15.

Published in final edited form as: Dev Biol. 2011 Oct 15; 358(2): 356–367. Published online 2011 Jul 23. doi: 10.1016/j.ydbio.2011.05.676

PMCID:: PMC3183228

Abstract Article PDF–5.4M

Select item 317805911.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 316259612.

Comparative Transcriptome Analyses Indicate Molecular Homology of Zebrafish Swimbladder and Mammalian Lung

Weiling Zheng, Zhengyuan Wang, John E. Collins, Robert M. Andrews, Derek Stemple, Zhiyuan Gong

PLoS One. 2011; 6(8): e24019. Published online 2011 Aug 26. doi: 10.1371/journal.pone.0024019

PMCID:: PMC3162596

Abstract Article PDF–1.1M

Select item 119954613.

The zebrafish gene map defines ancestral vertebrate chromosomes

Ian G. Woods, Catherine Wilson, Brian Friedlander, Patricia Chang, Daengnoy K. Reyes, Rebecca Nix, Peter D. Kelly, Felicia Chu, John H. Postlethwait, William S. Talbot

Genome Res. 2005 Sep; 15(9): 1307–1314. doi: 10.1101/gr.4134305

PMCID:: PMC1199546

Abstract Article PDF–595K

Select item 13924114.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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