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Select item 109558021.

Integration of transcriptomes of senescent cell models with multi-tissue patient samples reveals reduced COL6A3 as an inducer of senescence

Radoslav Savić, Jialiang Yang, Simon Koplev, Mahru C. An, Priyanka L. Patel, Robert N. O’Brien, Brittany N. Dubose, Tetyana Dodatko, Eduard Rogatsky, Katyayani Sukhavasi, Raili Ermel, Arno Ruusalepp, Sander M. Houten, Jason C. Kovacic, Andrew F. Stewart, Christopher B. Yohn, Eric E. Schadt, Remi-Martin Laberge, Johan L.M. Björkegren, Zhidong Tu, Carmen Argmann

Cell Rep. Author manuscript; available in PMC 2024 Mar 21.

Published in final edited form as: Cell Rep. 2023 Nov 28; 42(11): 113371. Published online 2023 Nov 7. doi: 10.1016/j.celrep.2023.113371

PMCID:: PMC10955802

Abstract Article PDF–2.8M

Select item 100599732.

Extracellular Matrix Disorganization and Sarcolemmal Alterations in COL6-Related Myopathy Patients with New Variants of COL6 Genes

Simona Zanotti, Francesca Magri, Sabrina Salani, Laura Napoli, Michela Ripolone, Dario Ronchi, Francesco Fortunato, Patrizia Ciscato, Daniele Velardo, Maria Grazia D’Angelo, Francesca Gualandi, Vincenzo Nigro, Monica Sciacco, Stefania Corti, Giacomo Pietro Comi, Daniela Piga

Int J Mol Sci. 2023 Mar; 24(6): 5551. Published online 2023 Mar 14. doi: 10.3390/ijms24065551

PMCID:: PMC10059973

Abstract Article PDF–11M

Select item 100485223.

Genetic Analysis of HIBM Myopathy-Specific GNE V727M Hotspot Mutation Identifies a Novel COL6A3 Allied Gene Signature That Is Also Deregulated in Multiple Neuromuscular Diseases and Myopathies

Shivangi Attri, Moien Lone, Amit Katiyar, Vikas Sharma, Vinay Kumar, Chaitenya Verma, Suresh Kumar Gahlawat

Genes (Basel) 2023 Mar; 14(3): 567. Published online 2023 Feb 24. doi: 10.3390/genes14030567

PMCID:: PMC10048522

Abstract Article PDF–10M

Select item 99868174.

METTL3 protects METTL14 from STUB1‐mediated degradation to maintain m⁶A homeostasis

Zhan‐Cheng Zeng, Qi Pan, Yu‐Meng Sun, Heng‐Jing Huang, Xiao‐Tong Chen, Tian‐Qi Chen, Bo He, Hua Ye, Shun‐Xin Zhu, Ke‐Jia Pu, Ke Fang, Wei Huang, Yue‐Qin Chen, Wen‐Tao Wang

EMBO Rep. 2023 Mar; 24(3): e55762. Published online 2023 Jan 4. doi: 10.15252/embr.202255762

PMCID:: PMC9986817

Abstract Article PDF–3.5M

Select item 83641815.

Protein interaction landscapes revealed by advanced in vivo cross-linking–mass spectrometry

Andrew Wheat, Clinton Yu, Xiaorong Wang, Anthony M. Burke, Ilan E. Chemmama, Robyn M. Kaake, Peter Baker, Scott D. Rychnovsky, Jing Yang, Lan Huang

Proc Natl Acad Sci U S A. 2021 Aug 10; 118(32): e2023360118. Published online 2021 Aug 4. doi: 10.1073/pnas.2023360118

PMCID:: PMC8364181

Abstract Article PDF–3.0M

Select item 81917426.

Comprehensive proteomic characterization of stem cell-derived extracellular matrices

Héloïse Ragelle, Alexandra Naba, Benjamin L. Larson, Fangheng Zhou, Miralem Prijic, Charles A. Whittaker, Amanda Del Rosario, Robert Langer, Richard O. Hynes, Daniel G. Anderson

Biomaterials. Author manuscript; available in PMC 2021 Jun 10.

Published in final edited form as: Biomaterials. 2017 Jun; 128: 147–159. Published online 2017 Mar 7. doi: 10.1016/j.biomaterials.2017.03.008

PMCID:: PMC8191742

Abstract Article PDF–1.5M

Select item 81650307.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 81061558.

Study of the collagen type VI alpha 3 (COL6A3) gene in Parkinson’s disease

Chong-Yao Jin, Ran Zheng, Zhi-Hao Lin, Nai-Jia Xue, Ying Chen, Ting Gao, Yi-Qun Yan, Yi Fang, Ya-Ping Yan, Xin-Zhen Yin, Jun Tian, Jia-Li Pu, Bao-Rong Zhang

BMC Neurol. 2021; 21: 187. Published online 2021 May 8. doi: 10.1186/s12883-021-02215-7

PMCID:: PMC8106155

Abstract Article PDF–1.6M

Select item 80787289.

Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics

Alexandra Naba, Oliver M. T. Pearce, Amanda Del Rosario, Duanduan Ma, Huiming Ding, Vinothini Rajeeve, Pedro R. Cutillas, Frances R. Balkwill, Richard O. Hynes

J Proteome Res. Author manuscript; available in PMC 2021 Apr 27.

Published in final edited form as: J Proteome Res. 2017 Aug 4; 16(8): 3083–3091. Published online 2017 Jul 19. doi: 10.1021/acs.jproteome.7b00191

PMCID:: PMC8078728

Abstract Article PDF–2.1M

Select item 767884810.

COL6A3 expression in adipose tissue cells is associated with levels of the homeobox transcription factor PRRX1

Simon N. Dankel, Elise Grytten, Jan-Inge Bjune, Hans Jørgen Nielsen, Arne Dietrich, Matthias Blüher, Jørn V. Sagen, Gunnar Mellgren

Sci Rep. 2020; 10: 20164. Published online 2020 Nov 19. doi: 10.1038/s41598-020-77406-2

PMCID:: PMC7678848

Abstract Article PDF–1.0M

Select item 747948411.

Identification of Key Prognostic Biomarker and Its Correlation with Immune Infiltrates in Pancreatic Ductal Adenocarcinoma

Hong Luan, Chuang Zhang, Tuo Zhang, Ye He, Yanna Su, Liping Zhou

Dis Markers. 2020; 2020: 8825997. Published online 2020 Aug 31. doi: 10.1155/2020/8825997

PMCID:: PMC7479484

Abstract Article PDF–4.7M

Select item 747670912.

Structure of a collagen VI α3 chain VWA domain array: adaptability and functional implications of myopathy causing mutations

Herimela Solomon-Degefa, Jan M. Gebauer, Cy M. Jeffries, Carolin D. Freiburg, Patrick Meckelburg, Louise E. Bird, Ulrich Baumann, Dmitri I. Svergun, Raymond J. Owens, Jörn M. Werner, Elmar Behrmann, Mats Paulsson, Raimund Wagener

J Biol Chem. 2020 Sep 4; 295(36): 12755–12771. Published online 2020 Jul 21. doi: 10.1074/jbc.RA120.014865

PMCID:: PMC7476709

Abstract Article PDF–4.8M

Select item 712520513.

A Fragment of Collagen Type VI alpha-3 chain is Elevated in Serum from Patients with Gastrointestinal Disorders

Signe Holm Nielsen, Joachim Høg Mortensen, Nicholas Willumsen, Daniel Guldager Kring Rasmussen, Ditte J. Mogensen, Antonio Di Sabatino, Giuseppe Mazza, Lars Nannestad Jørgensen, Paolo Giuffrida, Massimo Pinzani, Lone Klinge, Jens Kjeldsen, Diana Julie Leeming, Morten Asser Karsdal, Federica Genovese

Sci Rep. 2020; 10: 5910. Published online 2020 Apr 3. doi: 10.1038/s41598-020-62474-1

PMCID:: PMC7125205

Abstract Article PDF–1.0M

Select item 676201614.

Dermatofibrosarcoma protuberans with a novel COL6A3-PDGFD fusion gene and apparent predilection for breast

Brendan C. Dickson, Jason L. Hornick, Christopher D. M. Fletcher, Elizabeth G. Demicco, David J. Howarth, David Swanson, Lei Zhang, Yun-Shao Sung, Cristina R. Antonescu

Genes Chromosomes Cancer. Author manuscript; available in PMC 2019 Sep 26.

Published in final edited form as: Genes Chromosomes Cancer. 2018 Sep; 57(9): 437–445. Published online 2018 Aug 14. doi: 10.1002/gcc.22663

PMCID:: PMC6762016

Abstract Article PDF–1.7M

Select item 661518015.

COL6A3 polymorphisms were associated with lung cancer risk in a Chinese population

Ying Duan, Gaowen Liu, Yao Sun, Jiamin Wu, Zichao Xiong, Tianbo Jin, Mingwei Chen

Respir Res. 2019; 20: 143. Published online 2019 Jul 8. doi: 10.1186/s12931-019-1114-y

PMCID:: PMC6615180

Abstract Article PDF–657K

Select item 653835116.

Human endotrophin as a driver of malignant tumor growth

Dawei Bu, Clair Crewe, Christine M. Kusminski, Ruth Gordillo, Alexandra L. Ghaben, Min Kim, Jiyoung Park, Hui Deng, Wei Xiong, Xiao-Zheng Liu, Per Eystein Lønning, Nils Halberg, Adan Rios, Yujun Chang, Anneliese Gonzalez, Ningyan Zhang, Zhiqiang An, Philipp E. Scherer

JCI Insight. 2019 May 2; 4(9): e125094. Published online 2019 May 2. doi: 10.1172/jci.insight.125094