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Items: 1 to 20 of 30

1.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
ArticlePDF–3.2M
2.
Identification of a micropeptide and multiple secondary cell genes that modulate Drosophila male reproductive success
Clément Immarigeon, Yohan Frei, Sofie Y. N. Delbare, Dragan Gligorov, Pedro Machado Almeida, Jasmine Grey, Léa Fabbro, Emi Nagoshi, Jean-Christophe Billeter, Mariana F. Wolfner, François Karch, Robert K. Maeda
Proc Natl Acad Sci U S A. 2021 Apr 13; 118(15): e2001897118. Published online 2021 Apr 5. doi: 10.1073/pnas.2001897118
PMCID:
PMC8053986
ArticlePDF–1.9M
3.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
ArticlePDF–3.2M
4.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
ArticlePDF–4.0M
5.
Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome
Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair
Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999
PMCID:
PMC4928047
ArticlePDF–3.1M
6.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
ArticlePDF–2.2M
7.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
ArticlePDF–4.9M
8.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
ArticlePDF–1022K
9.
Characterizing Male–Female Interactions Using Natural Genetic Variation in Drosophila melanogaster
Michael Reinhart, Tara Carney, Andrew G. Clark, Anthony C. Fiumera
J Hered. 2015 Jan-Feb; 106(1): 67–79. Published online 2014 Nov 25. doi: 10.1093/jhered/esu076
PMCID:
PMC4261835
ArticlePDF–879K
10.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
ArticlePDF–1.5M
11.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
ArticlePDF–1.6M
12.
Conserved properties of Drosophila and human spermatozoal mRNA repertoires
Bettina E. Fischer, Elizabeth Wasbrough, Lisa A. Meadows, Owen Randlet, Steve Dorus, Timothy L. Karr, Steven Russell
Proc Biol Sci. 2012 Jul 7; 279(1738): 2636–2644. Published online 2012 Feb 29. doi: 10.1098/rspb.2012.0153
PMCID:
PMC3350705
ArticlePDF–289K
13.
Partitioning Transcript Variation in Drosophila: Abundance, Isoforms, and Alleles
Yajie Yang, Rita M. Graze, Brandon M. Walts, Cecilia M. Lopez, Henry V. Baker, Marta L. Wayne, Sergey V. Nuzhdin, Lauren M. McIntyre
G3 (Bethesda) 2011 Nov; 1(6): 427–436. Published online 2011 Nov 1. doi: 10.1534/g3.111.000596
PMCID:
PMC3276160
ArticlePDF–1.3M
14.
A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionary-conserved pain gene
G. Gregory Neely, Andreas Hess, Michael Costigan, Alex C. Keene, Spyros Goulas, Michiel Langeslag, Robert S Griffin, Inna Belfer, Feng Dai, Shad Smith, Luda Diatchenko, Vaijayanti Gupta, Cui-ping Xia, Sabina Amann, Silke Kreitz, Cornelia Heindl-Erdmann, Susanne Wolz, Cindy V. Ly, Suchir Arora, Rinku Sarangi, Debasis Dan, Maria Novatchkova, Mark Rosenzweig, Dustin Gibson, Darwin Truong, Daniel Schramek, Tamara Zoranovic, Shane J. F. Cronin, Belinda Angjeli, Kay Brune, Georg Dietzl, William Maixner, Arabella Meixner, Winston Thomas, J. Andrew Pospisilik, Mattias Alenius, Michaela Kress, Sai Subramaniam, Paul A. Garrity, Hugo J. Bellen, Clifford J. Woolf, Josef M. Penninger
Cell. Author manuscript; available in PMC 2011 Nov 12.
Published in final edited form as: Cell. 2010 Nov 12; 143(4): 628–638. doi: 10.1016/j.cell.2010.09.047
PMCID:
PMC3040441
ArticlePDF–2.0M
15.
Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis
Tania Dottorini, Nicola Senin, Giorgio Mazzoleni, Kalle Magnusson, Andrea Crisanti
BMC Bioinformatics. 2011; 12: 34. Published online 2011 Jan 26. doi: 10.1186/1471-2105-12-34
PMCID:
PMC3040130
ArticlePDF–478K
16.
Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin
Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker
Science. Author manuscript; available in PMC 2010 Feb 19.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816
PMCID:
PMC2825053
ArticlePDF–858K
17.
The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin
Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen
Science. Author manuscript; available in PMC 2010 Feb 10.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815
Correction in:
volume 317 on page 1325
PMCID:
PMC2819280
ArticlePDF–1.3M
18.
Evolution in the Fast Lane: Rapidly Evolving Sex-Related Genes in Drosophila
Wilfried Haerty, Santosh Jagadeeshan, Rob J. Kulathinal, Alex Wong, Kristipati Ravi Ram, Laura K. Sirot, Lisa Levesque, Carlo G. Artieri, Mariana F. Wolfner, Alberto Civetta, Rama S. Singh
Genetics. 2007 Nov; 177(3): 1321–1335. doi: 10.1534/genetics.107.078865
PMCID:
PMC2147986
ArticlePDF–772K
19.
The Drosophila melanogaster seminal fluid protein Acp62F is a protease inhibitor that is toxic upon ectopic expression.
Oliver Lung, Uyen Tram, Casey M Finnerty, Marcie A Eipper-Mains, John M Kalb, Mariana F Wolfner
Genetics. 2002 Jan; 160(1): 211–224. doi: 10.1093/genetics/160.1.211
PMCID:
PMC1461949
SummaryPDF–277K
20.
Molecular population genetics of male accessory gland proteins in Drosophila.
D J Begun, P Whitley, B L Todd, H M Waldrip-Dail, A G Clark
Genetics. 2000 Dec; 156(4): 1879–1888. doi: 10.1093/genetics/156.4.1879
PMCID:
PMC1461396
SummaryPDF–193K

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