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Items: 1 to 20 of 42

1.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
2.
CRISPR/Cas13 effectors have differing extents of off-target effects that limit their utility in eukaryotic cells
Yuxi Ai, Dongming Liang, Jeremy E Wilusz
Nucleic Acids Res. 2022 Jun 24; 50(11): e65. Published online 2022 Mar 4. doi: 10.1093/nar/gkac159
PMCID:
PMC9226543
AbstractArticlePDF–4.3M
3.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
4.
Use of circular RNAs as markers of readthrough transcription to identify factors regulating cleavage/polyadenylation events
Dongming Liang, Deirdre C. Tatomer, Jeremy E. Wilusz
Methods. Author manuscript; available in PMC 2022 Dec 1.
Published in final edited form as: Methods. 2021 Dec; 196: 121–128. Published online 2021 Apr 18. doi: 10.1016/j.ymeth.2021.04.012
PMCID:
PMC8522170
AbstractArticlePDF–1.1M
5.
The Exon Junction Complex and intron removal prevent re-splicing of mRNA
Brian Joseph, Eric C. Lai
PLoS Genet. 2021 May; 17(5): e1009563. Published online 2021 May 25. doi: 10.1371/journal.pgen.1009563
PMCID:
PMC8184009
AbstractArticlePDF–2.4M
6.
A field-based quantitative analysis of sublethal effects of air pollution on pollinators
Geetha G. Thimmegowda, Susan Mullen, Katie Sottilare, Ankit Sharma, Saptashi Soham Mohanta, Axel Brockmann, Perundurai S. Dhandapany, Shannon B. Olsson
Proc Natl Acad Sci U S A. 2020 Aug 25; 117(34): 20653–20661. Published online 2020 Aug 10. doi: 10.1073/pnas.2009074117
PMCID:
PMC7456092
AbstractArticlePDF–1.4M
7.
The yellow gene influences Drosophila male mating success through sex comb melanization
Jonathan H Massey, Daayun Chung, Igor Siwanowicz, David L Stern, Patricia J Wittkopp
eLife. 2019; 8: e49388. Published online 2019 Oct 15. doi: 10.7554/eLife.49388
PMCID:
PMC6794089
AbstractArticlePDF–5.3M
8.
A length-dependent evolutionarily conserved pathway controls nuclear export of circular RNAs
Chuan Huang, Dongming Liang, Deirdre C. Tatomer, Jeremy E. Wilusz
Genes Dev. 2018 May 1; 32(9-10): 639–644. doi: 10.1101/gad.314856.118
PMCID:
PMC6004072
AbstractArticlePDF–678K
9.
The output of protein-coding genes shifts to circular RNAs when the pre-mRNA processing machinery is limiting
Dongming Liang, Deirdre C. Tatomer, Zheng Luo, Huang Wu, Li Yang, Ling-Ling Chen, Sara Cherry, Jeremy E. Wilusz
Mol Cell. Author manuscript; available in PMC 2018 Dec 7.
Published in final edited form as: Mol Cell. 2017 Dec 7; 68(5): 940–954.e3. Published online 2017 Nov 22. doi: 10.1016/j.molcel.2017.10.034
PMCID:
PMC5728686
AbstractArticlePDF–3.1M
10.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
11.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
12.
Phenotypic Plasticity through Transcriptional Regulation of the Evolutionary Hotspot Gene tan in Drosophila melanogaster
Jean-Michel Gibert, Emmanuèle Mouchel-Vielh, Sandra De Castro, Frédérique Peronnet
PLoS Genet. 2016 Aug; 12(8): e1006218. Published online 2016 Aug 10. doi: 10.1371/journal.pgen.1006218
PMCID:
PMC4980059
AbstractArticlePDF–15M
13.
Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins
Marianne C. Kramer, Dongming Liang, Deirdre C. Tatomer, Beth Gold, Zachary M. March, Sara Cherry, Jeremy E. Wilusz
Genes Dev. 2015 Oct 15; 29(20): 2168–2182. doi: 10.1101/gad.270421.115
PMCID:
PMC4617980
AbstractArticlePDF–1.7M
14.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
15.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
16.
The Genetic Basis for Variation in Olfactory Behavior in Drosophila melanogaster
Gunjan H. Arya, Michael M. Magwire, Wen Huang, Yazmin L. Serrano-Negron, Trudy F.C. Mackay, Robert R.H. Anholt
Chem Senses. 2015 May; 40(4): 233–243. Published online 2015 Feb 15. doi: 10.1093/chemse/bjv001
PMCID:
PMC4398050
AbstractArticlePDF–8.9M
17.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
18.
Dopamine Dynamics and Signaling in Drosophila: An Overview of Genes, Drugs and Behavioral Paradigms
Shinya Yamamoto, Elaine S. Seto
Exp Anim. 2014; 63(2): 107–119. Published online 2014 Apr 26. doi: 10.1538/expanim.63.107
PMCID:
PMC4160991
AbstractArticlePDF–1.6M
19.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
20.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M

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