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Items: 1 to 20 of 33

1.
The Lifespan of D. melanogaster Depends on the Function of the Gagr Gene, a Domesticated gag Gene of Drosophila LTR Retrotransposons
Yevgenia Balakireva, Maria Nikitina, Pavel Makhnovskii, Inna Kukushkina, Ilya Kuzmin, Alexander Kim, Lidia Nefedova
Insects. 2024 Jan; 15(1): 68. Published online 2024 Jan 17. doi: 10.3390/insects15010068
PMCID:
PMC10816282
AbstractArticlePDF–4.1M
2.
Transcriptional and Epigenetic Regulation of Temporal Patterning in Neural Progenitors
Alokananda Ray, Hailun Zhu, Andrew Ding, Xin Li
Dev Biol. Author manuscript; available in PMC 2023 Jun 6.
Published in final edited form as: Dev Biol. 2022 Jan; 481: 116–128. Published online 2021 Oct 16. doi: 10.1016/j.ydbio.2021.10.006
PMCID:
PMC10243876
AbstractArticlePDF–1.2M
3.
A modERN resource: identification of Drosophila transcription factor candidate target genes using RNAi
William W Fisher, Ann S Hammonds, Richard Weiszmann, Benjamin W Booth, Louis Gevirtzman, Jaeda E J Patton, Connor A Kubo, Robert H Waterston, Susan E Celniker
Genetics. 2023 Apr; 223(4): iyad004. Published online 2023 Jan 19. doi: 10.1093/genetics/iyad004
PMCID:
PMC10078917
AbstractArticlePDF–18M
4.
An expanded toolkit for Drosophila gene tagging using synthesized homology donor constructs for CRISPR-mediated homologous recombination
Oguz Kanca, Jonathan Zirin, Yanhui Hu, Burak Tepe, Debdeep Dutta, Wen-Wen Lin, Liwen Ma, Ming Ge, Zhongyuan Zuo, Lu-Ping Liu, Robert W Levis, Norbert Perrimon, Hugo J Bellen
eLife. 2022; 11: e76077. Published online 2022 Jun 20. doi: 10.7554/eLife.76077
PMCID:
PMC9239680
AbstractArticlePDF–1.2M
5.
Cutting edge technologies expose the temporal regulation of neurogenesis in the Drosophila nervous system
Makoto Sato, Takumi Suzuki
Fly (Austin) 2022; 16(1): 222–232. Published online 2022 May 13. doi: 10.1080/19336934.2022.2073158
PMCID:
PMC9116403
AbstractArticlePDF–889K
6.
A comprehensive temporal patterning gene network in Drosophila medulla neuroblasts revealed by single-cell RNA sequencing
Hailun Zhu, Sihai Dave Zhao, Alokananda Ray, Yu Zhang, Xin Li
Nat Commun. 2022; 13: 1247. Published online 2022 Mar 10. doi: 10.1038/s41467-022-28915-3
PMCID:
PMC8913700
AbstractArticlePDF–11M
7.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
8.
Phylogenetic analysis and embryonic expression of panarthropod Dmrt genes
Virginia Panara, Graham E. Budd, Ralf Janssen
Front Zool. 2019; 16: 23. Published online 2019 Jul 2. doi: 10.1186/s12983-019-0322-0
PMCID:
PMC6604209
AbstractArticlePDF–22M
9.
A Comprehensive Drosophila melanogaster Transcription Factor Interactome
Leila Shokri, Sachi Inukai, Antonina Hafner, Kathryn Weinand, Korneel Hens, Anastasia Vedenko, Stephen S. Gisselbrecht, Riccardo Dainese, Johannes Bischof, Edy Furger, Jean-Daniel Feuz, Konrad Basler, Bart Deplancke, Martha L. Bulyk
Cell Rep. Author manuscript; available in PMC 2019 Apr 26.
Published in final edited form as: Cell Rep. 2019 Apr 16; 27(3): 955–970.e7. doi: 10.1016/j.celrep.2019.03.071
PMCID:
PMC6485956
AbstractArticlePDF–1.6M
10.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
11.
mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster
Gildas Lepennetier, Francesco Catania
G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231
PMCID:
PMC4889658
AbstractArticlePDF–1.5M
12.
The genetic basis of natural variation in mushroom body size in Drosophila melanogaster
Liesbeth Zwarts, Lies Vanden Broeck, Elisa Cappuyns, Julien F. Ayroles, Michael M. Magwire, Veerle Vulsteke, Jason Clements, Trudy F. C. Mackay, Patrick Callaerts
Nat Commun. 2015; 6: 10115. Published online 2015 Dec 11. doi: 10.1038/ncomms10115
PMCID:
PMC4682101
AbstractArticlePDF–2.0M
13.
Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein–Uhlenbeck Models
Marina Naval-Sánchez, Delphine Potier, Gert Hulselmans, Valerie Christiaens, Stein Aerts
Mol Biol Evol. 2015 Sep; 32(9): 2441–2455. Published online 2015 May 4. doi: 10.1093/molbev/msv107
PMCID:
PMC4540964
AbstractArticlePDF–2.8M
14.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
15.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
16.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
17.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
18.
Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions
Marina Naval-Sánchez, Delphine Potier, Lotte Haagen, Máximo Sánchez, Sebastian Munck, Bram Van de Sande, Fernando Casares, Valerie Christiaens, Stein Aerts
Genome Res. 2013 Jan; 23(1): 74–88. doi: 10.1101/gr.140426.112
PMCID:
PMC3530685
AbstractArticlePDF–2.3M
19.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
20.
Transcriptome Analysis of Drosophila CNS Midline Cells Reveals Diverse Peptidergic Properties and a Role for castor in Neuronal Differentiation
Joseph R. Fontana, Stephen T. Crews
Dev Biol. Author manuscript; available in PMC 2013 Dec 1.
Published in final edited form as: Dev Biol. 2012 Dec 1; 372(1): 131–142. Published online 2012 Sep 23. doi: 10.1016/j.ydbio.2012.09.010
PMCID:
PMC3479357
AbstractArticlePDF–2.7M

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