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Select item 108636301.

Neuronal Wiring Receptors Dprs and DIPs Are GPI Anchored and This Modification Contributes to Their Cell Surface Organization

Meike Lobb-Rabe, Wioletta I. Nawrocka, Ruiling Zhang, James Ashley, Robert A. Carrillo, Engin Özkan

eNeuro. 2024 Feb; 11(2): ENEURO.0184-23.2023. Prepublished online 2024 Jan 17. Published online 2024 Feb 9. doi: 10.1523/ENEURO.0184-23.2023

PMCID:: PMC10863630

Abstract Article PDF–5.0M

Select item 91887562.

Systematic expression profiling of Dpr and DIP genes reveals cell surface codes in Drosophila larval motor and sensory neurons

Yupu Wang, Meike Lobb-Rabe, James Ashley, Purujit Chatterjee, Veera Anand, Hugo J. Bellen, Oguz Kanca, Robert A. Carrillo

Development. 2022 May 15; 149(10): dev200355. Published online 2022 May 19. doi: 10.1242/dev.200355

PMCID:: PMC9188756

Abstract Article

Select item 79724543.

Investigation of Drosophila fruitless neurons that express Dpr/DIP cell adhesion molecules

Savannah G Brovero, Julia C Fortier, Hongru Hu, Pamela C Lovejoy, Nicole R Newell, Colleen M Palmateer, Ruei-Ying Tzeng, Pei-Tseng Lee, Kai Zinn, Michelle N Arbeitman

eLife. 2021; 10: e63101. Published online 2021 Feb 22. doi: 10.7554/eLife.63101

PMCID:: PMC7972454

Abstract Article PDF–17M

Select item 71954914.

DIP/Dpr interactions and the evolutionary design of specificity in protein families

Alina P. Sergeeva, Phinikoula S. Katsamba, Filip Cosmanescu, Joshua J. Brewer, Goran Ahlsen, Seetha Mannepalli, Lawrence Shapiro, Barry Honig

Nat Commun. 2020; 11: 2125. Published online 2020 May 1. doi: 10.1038/s41467-020-15981-8

PMCID:: PMC7195491

Abstract Article PDF–3.6M

Select item 67583795.

Defective Proboscis Extension Response (DPR), a Member of the Ig Superfamily Required for the Gustatory Response to Salt

Makoto Nakamura, David Baldwin, Susannah Hannaford, John Palka, Craig Montell

J Neurosci. 2002 May 1; 22(9): 3463–3472. doi: 10.1523/JNEUROSCI.22-09-03463.2002

PMCID:: PMC6758379

Abstract Article PDF–755K

Select item 65255116.

Family of neural wiring receptors in bilaterians defined by phylogenetic, biochemical, and structural evidence

Shouqiang Cheng, Yeonwoo Park, Justyna D. Kurleto, Mili Jeon, Kai Zinn, Joseph W. Thornton, Engin Özkan

Proc Natl Acad Sci U S A. 2019 May 14; 116(20): 9837–9842. Published online 2019 May 1. doi: 10.1073/pnas.1818631116

PMCID:: PMC6525511

Abstract Article PDF–1.3M

Select item 65065397.

Tissue-specific (ts)CRISPR as an efficient strategy for in vivo screening in Drosophila

Hagar Meltzer, Efrat Marom, Idan Alyagor, Oded Mayseless, Victoria Berkun, Netta Segal-Gilboa, Tamar Unger, David Luginbuhl, Oren Schuldiner

Nat Commun. 2019; 10: 2113. Published online 2019 May 8. doi: 10.1038/s41467-019-10140-0

PMCID:: PMC6506539

Abstract Article PDF–6.5M

Select item 63092248.

Neuron sub-type specific expression, interaction affinities, and specificity determinants of DIP/Dpr cell recognition proteins

Filip Cosmanescu, Phinikoula S. Katsamba, Alina P. Sergeeva, Goran Ahlsen, Saurabh D. Patel, Joshua J. Brewer, Liming Tan, Shuwa Xu, Qi Xiao, Sonal Nagarkar-Jaiswal, Aljoscha Nern, Hugo Bellen, S. Lawrence Zipursky, Barry Honig, Lawrence Shapiro

Neuron. Author manuscript; available in PMC 2019 Dec 19.

Published in final edited form as: Neuron. 2018 Dec 19; 100(6): 1385–1400.e6. Published online 2018 Nov 19. doi: 10.1016/j.neuron.2018.10.046

PMCID:: PMC6309224

Abstract Article PDF–3.3M

Select item 57078059.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900210.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 555475511.

Neural Immunoglobulin Superfamily Interaction Networks

Kai Zinn, Engin Özkan

Curr Opin Neurobiol. Author manuscript; available in PMC 2018 Aug 1.

Published in final edited form as: Curr Opin Neurobiol. 2017 Aug; 45: 99–105. Published online 2017 May 27. doi: 10.1016/j.conb.2017.05.010

PMCID:: PMC5554755

Abstract Article PDF–857K

Select item 480470712.

Ig Superfamily Ligand and Receptor Pairs Expressed in Synaptic Partners in Drosophila

Liming Tan, Kelvin Xi Zhang, Matthew Y. Pecot, Sonal Nagarkar-Jaiswal, Pei-Tseng Lee, Shin-ya Takemura, Jason M. McEwen, Aljoscha Nern, Shuwa Xu, Wael Tadros, Zhenqing Chen, Kai Zinn, Hugo J. Bellen, Marta Morey, S. Lawrence Zipursky

Cell. Author manuscript; available in PMC 2016 Jun 17.

Published in final edited form as: Cell. 2015 Dec 17; 163(7): 1756–1769. doi: 10.1016/j.cell.2015.11.021

PMCID:: PMC4804707

Abstract Article PDF–3.5M

Select item 473800513.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

Select item 472025914.

Control of synaptic connectivity by a network of Drosophila IgSF cell surface proteins

Robert A. Carrillo, Engin Özkan, Kaushiki P. Menon, Sonal Nagarkar-Jaiswal, Pei-Tseng Lee, Mili Jeon, Michael E. Birnbaum, Hugo J. Bellen, K. Christopher Garcia, Kai Zinn

Cell. Author manuscript; available in PMC 2016 Dec 17.

Published in final edited form as: Cell. 2015 Dec 17; 163(7): 1770–1782. doi: 10.1016/j.cell.2015.11.022

PMCID:: PMC4720259

Abstract Article PDF–2.7M

Select item 457069715.

Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach

Flavio Pazos Obregón, Cecilia Papalardo, Sebastián Castro, Gustavo Guerberoff, Rafael Cantera

BMC Genomics. 2015; 16(1): 694. Published online 2015 Sep 15. doi: 10.1186/s12864-015-1888-3

PMCID:: PMC4570697

Abstract Article PDF–2.0M

Select item 452833016.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832917.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288718.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 427152719.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

Select item 375666120.

An extracellular interactome of Immunoglobulin and LRR proteins reveals receptor-ligand networks

Engin Özkan, Robert A. Carrillo, Catharine L. Eastman, Richard Weiszmann, Deepa Waghray, Karl G. Johnson, Kai Zinn, Susan E. Celniker, K. Christopher Garcia

Cell. Author manuscript; available in PMC 2014 Jan 3.

Published in final edited form as: Cell. 2013 Jul 3; 154(1): 228–239. doi: 10.1016/j.cell.2013.06.006

PMCID:: PMC3756661

Abstract Article PDF–8.0M

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