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Items: 1 to 20 of 56

1.
Assessment of the roles of Spt5-nucleic acid contacts in promoter proximal pausing of RNA polymerase II
Roberta Dollinger, Eilene B. Deng, Josie Schultz, Sharon Wu, Haley R. Deorio, David S. Gilmour
J Biol Chem. 2023 Sep; 299(9): 105106. Published online 2023 Jul 28. doi: 10.1016/j.jbc.2023.105106
PMCID:
PMC10482750
AbstractArticlePDF–3.9M
2.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
3.
Kinetochore-independent mechanisms of sister chromosome separation
Hannah Vicars, Travis Karg, Brandt Warecki, Ian Bast, William Sullivan
PLoS Genet. 2021 Jan; 17(1): e1009304. Published online 2021 Jan 29. doi: 10.1371/journal.pgen.1009304
PMCID:
PMC7886193
AbstractArticlePDF–2.8M
4.
New roles for canonical transcription factors in repeat expansion diseases
Lindsey D. Goodman, Nancy M. Bonini
Trends Genet. Author manuscript; available in PMC 2021 Feb 1.
Published in final edited form as: Trends Genet. 2020 Feb; 36(2): 81–92. Published online 2019 Dec 11. doi: 10.1016/j.tig.2019.11.003
PMCID:
PMC6980727
AbstractArticlePDF–944K
5.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
6.
Identification of novel genes associated with longevity in Drosophila melanogaster - a computational approach
Bethany S. Hall, Yvonne A. Barnett, Jonathan J. Crofts, Nadia Chuzhanova
Aging (Albany NY) 2019 Dec 15; 11(23): 11244–11267. Published online 2019 Dec 3. doi: 10.18632/aging.102527
PMCID:
PMC6932890
AbstractArticlePDF–1.2M
7.
Toxic expanded GGGGCC repeat transcription is mediated by the PAF1 complex in C9orf72-associated FTD.
Lindsey D. Goodman, Mercedes Prudencio, Nicholas J. Kramer, Luis F. Martinez-Ramirez, Ananth R. Srinivasan, Matthews Lan, Michael J. Parisi, Yongqing Zhu, Jeannie Chew, Casey N. Cook, Amit Berson, Aaron D. Gitler, Leonard Petrucelli, Nancy M. Bonini
Nat Neurosci. Author manuscript; available in PMC 2019 Nov 20.
Published in final edited form as: Nat Neurosci. 2019 Jun; 22(6): 863–874. Published online 2019 May 20. doi: 10.1038/s41593-019-0396-1
Correction in:
Nat Neurosci. 2023 Feb 21
PMCID:
PMC6535128
AbstractArticlePDF–3.4M
8.
SOD1 activity threshold and TOR signalling modulate VAP(P58S) aggregation via reactive oxygen species-induced proteasomal degradation in a Drosophila model of amyotrophic lateral sclerosis
Kriti Chaplot, Lokesh Pimpale, Balaji Ramalingam, Senthilkumar Deivasigamani, Siddhesh S. Kamat, Girish S. Ratnaparkhi
Dis Model Mech. 2019 Feb 1; 12(2): dmm033803. Published online 2019 Feb 7. doi: 10.1242/dmm.033803
PMCID:
PMC6398501
AbstractArticle
9.
Spt4 selectively regulates the expression of C9orf72 sense and antisense mutant transcripts associated with c9FTD/ALS
Nicholas J. Kramer, Yari Carlomagno, Yong-Jie Zhang, Sandra Almeida, Casey N. Cook, Tania F. Gendron, Mercedes Prudencio, Marka Van Blitterswijk, Veronique Belzil, Julien Couthouis, Joseph West Paul, III, Lindsey D. Goodman, Lillian Daughrity, Jeannie Chew, Aliesha Garrett, Luc Pregent, Karen Jansen-West, Lilia J. Tabassian, Rosa Rademakers, Kevin Boylan, Neill R. Graff-Radford, Keith A. Josephs, Joseph E. Parisi, David S. Knopman, Ronald C. Petersen, Bradley F. Boeve, Ning Deng, Yanan Feng, Tzu-Hao Cheng, Dennis W. Dickson, Stanley N. Cohen, Nancy M. Bonini, Christopher D. Link, Fen-Biao Gao, Leonard Petrucelli, Aaron D. Gitler
Science. Author manuscript; available in PMC 2018 Feb 22.
Published in final edited form as: Science. 2016 Aug 12; 353(6300): 708–712. doi: 10.1126/science.aaf7791
PMCID:
PMC5823025
AbstractArticlePDF–778K
10.
Pho dynamically interacts with Spt5 to facilitate transcriptional switches at the hsp70 locus
Allwyn Pereira, Renato Paro
Epigenetics Chromatin. 2017; 10: 57. Published online 2017 Dec 6. doi: 10.1186/s13072-017-0166-9
PMCID:
PMC5718073
AbstractArticlePDF–5.2M
11.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
12.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
13.
Identification of Regions in the Spt5 Subunit of DRB Sensitivity-inducing Factor (DSIF) That Are Involved in Promoter-proximal Pausing
Yijun Qiu, David S. Gilmour
J Biol Chem. 2017 Mar 31; 292(13): 5555–5570. Published online 2017 Feb 17. doi: 10.1074/jbc.M116.760751
PMCID:
PMC5392697
AbstractArticlePDF–4.9M
14.
mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster
Gildas Lepennetier, Francesco Catania
G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231
PMCID:
PMC4889658
AbstractArticlePDF–1.5M
15.
Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet
Ibrahim Ömer Çiçek, Samir Karaca, Marko Brankatschk, Suzanne Eaton, Henning Urlaub, Halyna R. Shcherbata
Genetics. 2016 Mar; 202(3): 1167–1183. Published online 2016 Jan 22. doi: 10.1534/genetics.115.185371
PMCID:
PMC4788116
AbstractArticlePDF–4.7M
16.
Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes
Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili
Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062
PMCID:
PMC4738005
AbstractArticlePDF–205K
17.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
18.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
19.
Plasma membrane overgrowth causes fibrotic collagen accumulation and immune activation in Drosophila adipocytes
Yiran Zang, Ming Wan, Min Liu, Hongmei Ke, Shuangchun Ma, Lu-Ping Liu, Jian-Quan Ni, José Carlos Pastor-Pareja
eLife. 2015; 4: e07187. Published online 2015 Jun 19. doi: 10.7554/eLife.07187
PMCID:
PMC4490375
AbstractArticlePDF–6.6M
20.
The Drosophila Helicase Maleless (MLE) is Implicated in Functions Distinct From its Role in Dosage Compensation
Simona Cugusi, Satish Kallappagoudar, Huiping Ling, John C. Lucchesi
Mol Cell Proteomics. 2015 Jun; 14(6): 1478–1488. Published online 2015 Mar 16. doi: 10.1074/mcp.M114.040667
PMCID:
PMC4458714
AbstractArticlePDF–625K

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