PMC Links for GEO Profiles (Select 33169662) - PMC

Select item 103207661.

A transcriptional cofactor regulatory network for the C. elegans intestine

Brent B Horowitz, Shivani Nanda, Albertha J M Walhout

G3 (Bethesda) 2023 Jul; 13(7): jkad096. Published online 2023 Apr 29. doi: 10.1093/g3journal/jkad096

PMCID:: PMC10320766

Select item 79951762.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 62165903.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 47815974.

Ubiquitin-mediated pathways in C. elegans.

Edward T Kipreos

WormBook. 2005 : 1–24. Published online 2005 Dec 1. doi: 10.1895/wormbook.1.36.1

PMCID:: PMC4781597

Abstract Article

Select item 47814715.

DNA repair.

Nigel O'Neil, Ann Rose

WormBook. 2006 : 1–12. Published online 2006 Jan 13. doi: 10.1895/wormbook.1.54.1

PMCID:: PMC4781471

Abstract Article

Select item 33687716.

Ubiquitination is involved in secondary growth, not initial formation of polyglutamine protein aggregates in C. elegans

Gregory A Skibinski, Lynn Boyd

BMC Cell Biol. 2012; 13: 10. Published online 2012 Apr 11. doi: 10.1186/1471-2121-13-10

PMCID:: PMC3368771

Abstract Article PDF–3.0M

Select item 31020777.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 30579238.

Empirically-controlled mapping of the Caenorhabditis elegans protein-protein interactome network

Nicolas Simonis, Jean-François Rual, Anne-Ruxandra Carvunis, Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amélie Dricot, Muhammed A Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin Sook Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C Gunsalus, Michael E Cusick, David E Hill, Jan Tavernier, Frederick P Roth, Marc Vidal

Nat Methods. Author manuscript; available in PMC 2011 Mar 15.

Published in final edited form as: Nat Methods. 2009 Jan; 6(1): 47–54. doi: 10.1038/nmeth.1279

PMCID:: PMC3057923

Abstract Article PDF–3.0M

Select item 26919329.

What Was the Set of Ubiquitin and Ubiquitin-Like Conjugating Enzymes in the Eukaryote Common Ancestor?

Caroline Michelle, Patrick Vourc’h, Laurence Mignon, Christian R. Andres

J Mol Evol. 2009 Jun; 68(6): 616–628. Published online 2009 May 19. doi: 10.1007/s00239-009-9225-6

PMCID:: PMC2691932

Abstract Article PDF–456K

Select item 206375810.

Checkpoint silencing during the DNA damage response in Caenorhabditis elegans embryos

Antonia H. Holway, Seung-Hwan Kim, Adriana La Volpe, W. Matthew Michael

J Cell Biol. 2006 Mar 27; 172(7): 999–1008. doi: 10.1083/jcb.200512136

Correction in:: J Cell Biol. 2007 Aug 27; 178(5): 887.

PMCID:: PMC2063758

Abstract Article PDF–2.4M

Select item 195205811.

Ubiquitin conjugating enzymes participate in polyglutamine protein aggregation

Rebecca A Howard, Pratima Sharma, Connie Hajjar, Kim A Caldwell, Guy A Caldwell, Rusla du Breuil, Rhonda Moore, Lynn Boyd

BMC Cell Biol. 2007; 8: 32. Published online 2007 Jul 30. doi: 10.1186/1471-2121-8-32

PMCID:: PMC1952058

Abstract Article PDF–1.2M

Select item 186341912.

Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity

Julian Ceron, Jean-François Rual, Abha Chandra, Denis Dupuy, Marc Vidal, Sander van den Heuvel

BMC Dev Biol. 2007; 7: 30. Published online 2007 Apr 6. doi: 10.1186/1471-213X-7-30

PMCID:: PMC1863419

Abstract Article PDF–1.4M

Select item 169894913.

A Map of the Interactome Network of the Metazoan C. elegans

Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal

Science. Author manuscript; available in PMC 2006 Dec 14.

Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403

PMCID:: PMC1698949

Abstract Article PDF–1.4M

Select item 121880114.

Biochemical characterization of Caenorhabditis elegans UBC-1: self-association and auto-ubiquitination of a RAD6-like ubiquitin-conjugating enzyme in vitro.

D S Leggett, P M Candido

Biochem J. 1997 Oct 15; 327(Pt 2): 357–361. doi: 10.1042/bj3270357

PMCID:: PMC1218801

Summary PDF–353K

Select item 15044915.

Functional and phylogenetic analysis of the ubiquitylation system in Caenorhabditis elegans: ubiquitin-conjugating enzymes, ubiquitin-activating enzymes, and ubiquitin-like proteins

Donald Jones, Emily Crowe, Tracy A Stevens, E Peter M Candido

Genome Biol. 2002; 3(1): research0002.1–research0002.15. Published online 2001 Dec 12. doi: 10.1186/gb-2001-3-1-research0002

PMCID:: PMC150449

Abstract Article PDF–528K

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