PMC Links for GEO Profiles (Select 33169584) - PMC

Select item 94378481.

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans

Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono

J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343

PMCID:: PMC9437848

Abstract Article PDF–2.0M

Select item 84467932.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 79951763.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 62165924.

From “the Worm” to “the Worms” and Back Again: The Evolutionary Developmental Biology of Nematodes

Eric S. Haag, David H. A. Fitch, Marie Delattre

Genetics. 2018 Oct; 210(2): 397–433. Published online 2018 Oct 1. doi: 10.1534/genetics.118.300243

PMCID:: PMC6216592

Abstract Article PDF–2.6M

Select item 62165905.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 47815036.

Germline proliferation and its control.

Judith Kimble, Sarah L Crittenden

WormBook. 2005 : 1–14. Published online 2005 Aug 15. doi: 10.1895/wormbook.1.13.1

PMCID:: PMC4781503

Abstract Article

Select item 47814937.

Sex determination in the germ line.

Ronald Ellis, Tim Schedl

WormBook. 2007 : 1–13. Published online 2007 Mar 5. doi: 10.1895/wormbook.1.82.2

PMCID:: PMC4781493

Abstract Article

Select item 47810198.

The evolution of nematode sex determination: C. elegans as a reference point for comparative biology.

Eric S Haag

WormBook. 2005 : 1–14. Published online 2005 Dec 29. doi: 10.1895/wormbook.1.120.1

PMCID:: PMC4781019

Abstract Article

Select item 45739029.

The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo

Zhuo Du, Anthony Santella, Fei He, Pavak K. Shah, Yuko Kamikawa, Zhirong Bao

Dev Cell. Author manuscript; available in PMC 2016 Sep 14.

Published in final edited form as: Dev Cell. 2015 Sep 14; 34(5): 592–607. Published online 2015 Aug 27. doi: 10.1016/j.devcel.2015.07.014

PMCID:: PMC4573902

Abstract Article PDF–2.6M

Select item 310207710.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 309711511.

PRP-17 and the pre-mRNA splicing pathway are preferentially required for the proliferation versus meiotic development decision and germline sex determination in Caenorhabditis elegans

Jessica Amrozowicz Kerins, Momoyo Hanazawa, Maia Dorsett, Tim Schedl

Dev Dyn. Author manuscript; available in PMC 2011 May 18.

Published in final edited form as: Dev Dyn. 2010 May; 239(5): 1555–1572. doi: 10.1002/dvdy.22274

PMCID:: PMC3097115

Abstract Article PDF–1.8M

Select item 237389712.

A global analysis of genetic interactions in Caenorhabditis elegans

Alexandra B Byrne, Matthew T Weirauch, Victoria Wong, Martina Koeva, Scott J Dixon, Joshua M Stuart, Peter J Roy

J Biol. 2007; 6(3): 8. Published online 2007 Sep 26. doi: 10.1186/jbiol58

PMCID:: PMC2373897

Abstract Article PDF–3.5M

Select item 169894913.

A Map of the Interactome Network of the Metazoan C. elegans

Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal

Science. Author manuscript; available in PMC 2006 Dec 14.

Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403

PMCID:: PMC1698949

Abstract Article PDF–1.4M

Select item 137029214.

The MEP-1 zinc-finger protein acts with MOG DEAH box proteins to control gene expression via the fem-3 3' untranslated region in Caenorhabditis elegans.

Marco Belfiore, Laura D Mathies, Paolo Pugnale, Gary Moulder, Robert Barstead, Judith Kimble, Alessandro Puoti

RNA. 2002 Jun; 8(6): 725–739. doi: 10.1017/s1355838202028595

PMCID:: PMC1370292

Summary PDF–4.5M

Select item 53906015.

fog-2 and the Evolution of Self-Fertile Hermaphroditism in Caenorhabditis

Sudhir Nayak, Johnathan Goree, Tim Schedl

PLoS Biol. 2005 Jan; 3(1): e6. Published online 2004 Dec 28. doi: 10.1371/journal.pbio.0030006

PMCID:: PMC539060

Abstract Article PDF–1.0M

Select item 1622916.

The hermaphrodite sperm/oocyte switch requires the Caenorhabditis elegans homologs of PRP2 and PRP22

Alessandro Puoti, Judith Kimble

Proc Natl Acad Sci U S A. 2000 Mar 28; 97(7): 3276–3281. doi: 10.1073/pnas.97.7.3276

PMCID:: PMC16229

Abstract Article PDF–593K

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