PMC Links for GEO Profiles (Select 3101403) - PMC

Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr

Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0

PMCID:: PMC10105736

Abstract Article PDF–3.2M

Select item 99844536.

Shaping the scaling characteristics of gap gene expression patterns in Drosophila

Ruoqing Xu, Fei Dai, Honggang Wu, Renjie Jiao, Feng He, Jun Ma

Heliyon. 2023 Feb; 9(2): e13623. Published online 2023 Feb 10. doi: 10.1016/j.heliyon.2023.e13623

PMCID:: PMC9984453

Abstract Article PDF–3.2M

Select item 99178897.

Mechanisms of Interaction between Enhancers and Promoters in Three Drosophila Model Systems

Olga Kyrchanova, Vladimir Sokolov, Pavel Georgiev

Int J Mol Sci. 2023 Feb; 24(3): 2855. Published online 2023 Feb 2. doi: 10.3390/ijms24032855

PMCID:: PMC9917889

Abstract Article PDF–2.2M

Select item 96356448.

Enteric bacterial infection in Drosophila induces whole-body alterations in metabolic gene expression independently of the immune deficiency signaling pathway

Rujuta Deshpande, Byoungchun Lee, Savraj S Grewal

G3 (Bethesda) 2022 Nov; 12(11): jkac163. Published online 2022 Jul 4. doi: 10.1093/g3journal/jkac163

PMCID:: PMC9635644

Abstract Article PDF–2.2M

Select item 95039909.

RNA Polymerase II “Pause” Prepares Promoters for Upcoming Transcription during Drosophila Development

Marina Yu. Mazina, Elena V. Kovalenko, Aleksandra A. Evdokimova, Maksim Erokhin, Darya Chetverina, Nadezhda E. Vorobyeva

Int J Mol Sci. 2022 Sep; 23(18): 10662. Published online 2022 Sep 13. doi: 10.3390/ijms231810662

PMCID:: PMC9503990

Abstract Article PDF–3.8M

Select item 924561810.

Latent space of a small genetic network: Geometry of dynamics and information

Rabea Seyboldt, Juliette Lavoie, Adrien Henry, Jules Vanaret, Mariela D. Petkova, Thomas Gregor, Paul François

Proc Natl Acad Sci U S A. 2022 Jun 28; 119(26): e2113651119. Published online 2022 Jun 22. doi: 10.1073/pnas.2113651119

PMCID:: PMC9245618

Abstract Article PDF–3.4M

Select item 910052111.

Photoperiod-Dependent Expression of MicroRNA in Drosophila

Mirko Pegoraro, Bettina Fishman, Valeria Zonato, Georgios Zouganelis, Amanda Francis, Charalambos P. Kyriacou, Eran Tauber

Int J Mol Sci. 2022 May; 23(9): 4935. Published online 2022 Apr 29. doi: 10.3390/ijms23094935

PMCID:: PMC9100521

Abstract Article PDF–1.5M

Select item 901972612.

Optogenetic control of the Bicoid morphogen reveals fast and slow modes of gap gene regulation

Anand P. Singh, Ping Wu, Sergey Ryabichko, João Raimundo, Michael Swan, Eric Wieschaus, Thomas Gregor, Jared E. Toettcher

Cell Rep. Author manuscript; available in PMC 2022 Apr 20.

Published in final edited form as: Cell Rep. 2022 Mar 22; 38(12): 110543. doi: 10.1016/j.celrep.2022.110543

PMCID:: PMC9019726

Abstract Article PDF–2.3M

Select item 885167113.

Mitochondria as environments for the nuclear genome in Drosophila: mitonuclear G×G×E

David M Rand, James A Mossman, Adam N Spierer, John A Santiago

J Hered. 2022 Jan; 113(1): 37–47. Published online 2021 Dec 29. doi: 10.1093/jhered/esab066

PMCID:: PMC8851671

Abstract Article PDF–15M

Select item 872236714.

Mechanistic Gene Networks Inferred from Single-Cell Data with an Outlier-Insensitive Method

Jung Min Han, Sudheesha Perera, Zeba Wunderlich, Vipul Periwal

Math Biosci. Author manuscript; available in PMC 2022 Dec 1.

Published in final edited form as: Math Biosci. 2021 Dec; 342: 108722. Published online 2021 Oct 21. doi: 10.1016/j.mbs.2021.108722

PMCID:: PMC8722367

Abstract Article PDF–3.8M

Select item 861829315.

Application of Domain- and Genotype-Specific Models to Infer Post-Transcriptional Regulation of Segmentation Gene Expression in Drosophila

Maria A. Duk, Vitaly V. Gursky, Maria G. Samsonova, Svetlana Yu. Surkova

Life (Basel) 2021 Nov; 11(11): 1232. Published online 2021 Nov 13. doi: 10.3390/life11111232

PMCID:: PMC8618293

Abstract Article PDF–1.3M

Select item 851628916.

Patterning with clocks and genetic cascades: Segmentation and regionalization of vertebrate versus insect body plans

Margarete Diaz-Cuadros, Olivier Pourquié, Ezzat El-Sherif

PLoS Genet. 2021 Oct; 17(10): e1009812. Published online 2021 Oct 14. doi: 10.1371/journal.pgen.1009812

PMCID:: PMC8516289

Abstract Article PDF–1.4M

Select item 828489617.

Polycomb-group recruitment to a Drosophila target gene is the default state that is inhibited by a transcriptional activator

Elnaz Ghotbi, Piao Ye, Taylor Ervin, Anni Kum, Judith Benes, Richard S. Jones

Sci Adv. 2021 Jul; 7(29): eabg1556. Published online 2021 Jul 16. doi: 10.1126/sciadv.abg1556

PMCID:: PMC8284896

Abstract Article PDF–1.3M

Select item 813525218.

Secrets of secretion—how studies of the Drosophila salivary gland have informed our understanding of the cellular networks underlying secretory organ form and function

Rajprasad Loganathan, Ji Hoon Kim, Michael B. Wells, Deborah J. Andrew

Curr Top Dev Biol. Author manuscript; available in PMC 2021 Jul 1.

Published in final edited form as: Curr Top Dev Biol. 2021; 143: 1–36. Published online 2020 Nov 19. doi: 10.1016/bs.ctdb.2020.09.005

PMCID:: PMC8135252

Abstract Article PDF–1.1M

Select item 806858619.

Enhancer redundancy in development and disease

Evgeny Z. Kvon, Rachel Waymack, Mario G. Elabd, Zeba Wunderlich

Nat Rev Genet. Author manuscript; available in PMC 2021 Nov 1.

Published in final edited form as: Nat Rev Genet. 2021 May; 22(5): 324–336. Published online 2021 Jan 12. doi: 10.1038/s41576-020-00311-x

Correction in:: Nat Rev Genet. 2021 Apr 13

PMCID:: PMC8068586

Abstract Article PDF–1.6M

Select item 804066820.

The nuclear to cytoplasmic ratio directly regulates zygotic transcription in Drosophila through multiple modalities

Sahla Syed, Henry Wilky, João Raimundo, Bomyi Lim, Amanda A. Amodeo

Proc Natl Acad Sci U S A. 2021 Apr 6; 118(14): e2010210118. Published online 2021 Mar 31. doi: 10.1073/pnas.2010210118

PMCID:: PMC8040668

Abstract Article PDF–3.5M

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