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Items: 1 to 20 of 59

1.
DIS3 Variants are Associated With Primary Ovarian Insufficiency: Importance of Transcription/Translation in Oogenesis
Erica Boiman Johnstone, Bushra Gorsi, Emily Coelho, Barry Moore, Ashley M Farr, Amber R Cooper, Elaine R Mardis, Aleksander Rajkovic, Clement Y Chow, Mark Yandell, Corrine K Welt
J Clin Endocrinol Metab. 2023 Sep; 108(9): 2330–2335. Published online 2023 Mar 3. doi: 10.1210/clinem/dgad126
PMCID:
PMC10686695
AbstractArticle
2.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
3.
Cross-species identification of PIP5K1-, splicing- and ubiquitin-related pathways as potential targets for RB1-deficient cells
Andrey A. Parkhitko, Arashdeep Singh, Sharon Hsieh, Yanhui Hu, Richard Binari, Christopher J. Lord, Sridhar Hannenhalli, Colm J. Ryan, Norbert Perrimon
PLoS Genet. 2021 Feb; 17(2): e1009354. Published online 2021 Feb 16. doi: 10.1371/journal.pgen.1009354
PMCID:
PMC7909629
AbstractArticlePDF–4.6M
4.
The Integrator complex cleaves nascent mRNAs to attenuate transcription
Deirdre C. Tatomer, Nathan D. Elrod, Dongming Liang, Mei-Sheng Xiao, Jeffrey Z. Jiang, Michael Jonathan, Kai-Lieh Huang, Eric J. Wagner, Sara Cherry, Jeremy E. Wilusz
Genes Dev. 2019 Nov 1; 33(21-22): 1525–1538. doi: 10.1101/gad.330167.119
PMCID:
PMC6824465
AbstractArticlePDF–4.0M
5.
Biogenesis of RNase P RNA from an intron requires co-assembly with cognate protein subunits
Geeta Palsule, Venkat Gopalan, Amanda Simcox
Nucleic Acids Res. 2019 Sep 19; 47(16): 8746–8754. Published online 2019 Jul 9. doi: 10.1093/nar/gkz572
Correction in:
Nucleic Acids Res. 2019 Dec 2; 47(21): 11480.
PMCID:
PMC6797745
AbstractArticlePDF–1.7M
6.
Molecular determinants of metazoan tricRNA biogenesis
Casey A Schmidt, Joseph D Giusto, Alicia Bao, Anita K Hopper, A Gregory Matera
Nucleic Acids Res. 2019 Jul 9; 47(12): 6452–6465. Published online 2019 Apr 29. doi: 10.1093/nar/gkz311
PMCID:
PMC6614914
AbstractArticlePDF–6.3M
7.
Cell division cycle 7 kinase is a negative regulator of cell-mediated collagen degradation
Michael J. Podolsky, Deepti Gupta, Arnold Ha, Ryan Ta, Amin Khalifeh-Soltani, William McKleroy, Ritwik Datta, Dean Sheppard, Kamran Atabai
Am J Physiol Lung Cell Mol Physiol. 2018 Sep 1; 315(3): L360–L370. Published online 2018 May 24. doi: 10.1152/ajplung.00144.2018
PMCID:
PMC6172619
AbstractArticle
8.
Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities
Sarah Rennie, Maria Dalby, Marta Lloret-Llinares, Stylianos Bakoulis, Christian Dalager Vaagensø, Torben Heick Jensen, Robin Andersson
Nucleic Acids Res. 2018 Jun 20; 46(11): 5455–5469. Published online 2018 Apr 6. doi: 10.1093/nar/gky244
PMCID:
PMC6009668
AbstractArticlePDF–1.1M
9.
Defense Mechanisms against Viral Infection in Drosophila: RNAi and Non-RNAi
Luc Swevers, Jisheng Liu, Guy Smagghe
Viruses. 2018 May; 10(5): 230. Published online 2018 May 1. doi: 10.3390/v10050230
PMCID:
PMC5977223
AbstractArticlePDF–543K
10.
Stress-dependent miR-980 regulation of Rbfox1/A2bp1 promotes ribonucleoprotein granule formation and cell survival
Mariya M. Kucherenko, Halyna R. Shcherbata
Nat Commun. 2018; 9: 312. Published online 2018 Jan 22. doi: 10.1038/s41467-017-02757-w
PMCID:
PMC5778076
AbstractArticlePDF–9.6M
11.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
12.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
13.
The conserved RNA exonuclease Rexo5 is required for 3′ end maturation of 28S rRNA, 5S rRNA, and snoRNAs
Stefanie Gerstberger, Cindy Meyer, Sigi Benjamin-Hong, Joe Rodriguez, Daniel Briskin, Claudia Bognanni, Kimberly Bogardus, Hermann Steller, Thomas Tuschl
Cell Rep. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Cell Rep. 2017 Oct 17; 21(3): 758–772. doi: 10.1016/j.celrep.2017.09.067
PMCID:
PMC5662206
AbstractArticlePDF–3.0M
14.
Discovery and functional prioritization of Parkinson’s disease candidate genes from large-scale whole exome sequencing
Iris E. Jansen, Hui Ye, Sasja Heetveld, Marie C. Lechler, Helen Michels, Renée I. Seinstra, Steven J. Lubbe, Valérie Drouet, Suzanne Lesage, Elisa Majounie, J. Raphael Gibbs, Mike A. Nalls, Mina Ryten, Juan A. Botia, Jana Vandrovcova, Javier Simon-Sanchez, Melissa Castillo-Lizardo, Patrizia Rizzu, Cornelis Blauwendraat, Amit K. Chouhan, Yarong Li, Puja Yogi, Najaf Amin, Cornelia M. van Duijn, International Parkinson’s Disease Genetics Consortium (IPGDC), Huw R. Morris, Alexis Brice, Andrew B. Singleton, Della C. David, Ellen A. Nollen, Shushant Jain, Joshua M. Shulman, Peter Heutink
Genome Biol. 2017; 18: 22. Published online 2017 Jan 30. doi: 10.1186/s13059-017-1147-9
PMCID:
PMC5282828
AbstractArticlePDF–7.8M
15.
Proteome-wide association studies identify biochemical modules associated with a wing-size phenotype in Drosophila melanogaster
Hirokazu Okada, H. Alexander Ebhardt, Sibylle Chantal Vonesch, Ruedi Aebersold, Ernst Hafen
Nat Commun. 2016; 7: 12649. Published online 2016 Sep 1. doi: 10.1038/ncomms12649
PMCID:
PMC5025782
AbstractArticlePDF–2.2M
16.
A conserved virus-induced cytoplasmic TRAMP-like complex recruits the exosome to target viral RNA for degradation
Jerome M. Molleston, Leah R. Sabin, Ryan H. Moy, Sanjay V. Menghani, Keiko Rausch, Beth Gordesky-Gold, Kaycie C. Hopkins, Rui Zhou, Torben Heick Jensen, Jeremy E. Wilusz, Sara Cherry
Genes Dev. 2016 Jul 15; 30(14): 1658–1670. doi: 10.1101/gad.284604.116
PMCID:
PMC4973295
AbstractArticlePDF–1.0M
17.
Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome
Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair
Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999
PMCID:
PMC4928047
AbstractArticlePDF–3.1M
18.
Collaborative Control of Cell Cycle Progression by the RNA Exonuclease Dis3 and Ras Is Conserved Across Species
Mark J. Snee, William C. Wilson, Yi Zhu, Shin-Yu Chen, Beth A. Wilson, Cedric Kseib, Julie O’Neal, Nitin Mahajan, Michael H. Tomasson, Swathi Arur, James B. Skeath
Genetics. 2016 Jun; 203(2): 749–762. Published online 2016 Mar 30. doi: 10.1534/genetics.116.187930
PMCID:
PMC4896191
AbstractArticlePDF–2.9M
19.
A high-throughput pipeline for the production of synthetic antibodies for analysis of ribonucleoprotein complexes
Hong Na, John D. Laver, Jouhyun Jeon, Fateh Singh, Kristin Ancevicius, Yujie Fan, Wen Xi Cao, Kun Nie, Zhenglin Yang, Hua Luo, Miranda Wang, Olivia Rissland, J. Timothy Westwood, Philip M. Kim, Craig A. Smibert, Howard D. Lipshitz, Sachdev S. Sidhu
RNA. 2016 Apr; 22(4): 636–655. doi: 10.1261/rna.055186.115
PMCID:
PMC4793217
AbstractArticlePDF–1.5M
20.
Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes
Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili
Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062
PMCID:
PMC4738005
AbstractArticlePDF–205K

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