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Items: 1 to 20 of 32

1.
Dysregulation of innate immune signaling in animal models of spinal muscular atrophy
Eric L. Garcia, Rebecca E. Steiner, Amanda C. Raimer, Laura E. Herring, A. Gregory Matera, Ashlyn M. Spring
BMC Biol. 2024; 22: 94. Published online 2024 Apr 25. doi: 10.1186/s12915-024-01888-z
PMCID:
PMC11044505
AbstractArticlePDF–4.0M
2.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
3.
Assembly of higher-order SMN oligomers is essential for metazoan viability and requires an exposed structural motif present in the YG zipper dimer
Kushol Gupta, Ying Wen, Nisha S Ninan, Amanda C Raimer, Robert Sharp, Ashlyn M Spring, Kathryn L Sarachan, Meghan C Johnson, Gregory D Van Duyne, A Gregory Matera
Nucleic Acids Res. 2021 Jul 21; 49(13): 7644–7664. Published online 2021 Jun 28. doi: 10.1093/nar/gkab508
PMCID:
PMC8287954
AbstractArticlePDF–5.9M
4.
Intimate functional interactions between TGS1 and the Smn complex revealed by an analysis of the Drosophila eye development
Paolo Maccallini, Francesca Bavasso, Livia Scatolini, Elisabetta Bucciarelli, Gemma Noviello, Veronica Lisi, Valeria Palumbo, Simone D'Angeli, Stefano Cacchione, Giovanni Cenci, Laura Ciapponi, James G. Wakefield, Maurizio Gatti, Grazia Daniela Raffa
PLoS Genet. 2020 May; 16(5): e1008815. Published online 2020 May 26. doi: 10.1371/journal.pgen.1008815
PMCID:
PMC7289441
AbstractArticlePDF–3.9M
5.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
6.
Composition of the Survival Motor Neuron (SMN) Complex in Drosophila melanogaster
A. Gregory Matera, Amanda C. Raimer, Casey A. Schmidt, Jo A. Kelly, Gaith N. Droby, David Baillat, Sara ten Have, Angus I. Lamond, Eric J. Wagner, Kelsey M. Gray
G3 (Bethesda) 2019 Feb; 9(2): 491–503. Published online 2018 Dec 21. doi: 10.1534/g3.118.200874
PMCID:
PMC6385987
AbstractArticlePDF–2.9M
7.
Self-oligomerization regulates stability of survival motor neuron protein isoforms by sequestering an SCFSlmb degron
Kelsey M. Gray, Kevin A. Kaifer, David Baillat, Ying Wen, Thomas R. Bonacci, Allison D. Ebert, Amanda C. Raimer, Ashlyn M. Spring, Sara ten Have, Jacqueline J. Glascock, Kushol Gupta, Gregory D. Van Duyne, Michael J. Emanuele, Angus I. Lamond, Eric J. Wagner, Christian L. Lorson, A. Gregory Matera
Mol Biol Cell. 2018 Jan 15; 29(2): 96–110. doi: 10.1091/mbc.E17-11-0627
PMCID:
PMC5909936
AbstractArticlePDF–3.1M
8.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
9.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
10.
spenito is required for sex determination in Drosophila melanogaster
Dong Yan, Norbert Perrimon
Proc Natl Acad Sci U S A. 2015 Sep 15; 112(37): 11606–11611. Published online 2015 Aug 31. doi: 10.1073/pnas.1515891112
PMCID:
PMC4577178
AbstractArticlePDF–1.9M
11.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
12.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
13.
Genetic Interactions between the Members of the SMN-Gemins Complex in Drosophila
Rebecca M. Borg, Rémy Bordonne, Neville Vassallo, Ruben J. Cauchi
PLoS One. 2015; 10(6): e0130974. Published online 2015 Jun 22. doi: 10.1371/journal.pone.0130974
Correction in:
PLoS One. 2015; 10(9): e0139649.
PMCID:
PMC4476591
AbstractArticlePDF–4.6M
14.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
15.
SMA-Causing Missense Mutations in Survival motor neuron (Smn) Display a Wide Range of Phenotypes When Modeled in Drosophila
Kavita Praveen, Ying Wen, Kelsey M. Gray, John J. Noto, Akash R. Patlolla, Gregory D. Van Duyne, A. Gregory Matera
PLoS Genet. 2014 Aug; 10(8): e1004489. Published online 2014 Aug 21. doi: 10.1371/journal.pgen.1004489
PMCID:
PMC4140637
AbstractArticlePDF–1.5M
16.
The Gemin Associates of Survival Motor Neuron Are Required for Motor Function in Drosophila
Rebecca Borg, Ruben J. Cauchi
PLoS One. 2013; 8(12): e83878. Published online 2013 Dec 31. doi: 10.1371/journal.pone.0083878
PMCID:
PMC3877121
AbstractArticlePDF–11M
17.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
18.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
19.
A Protein Complex Network of Drosophila melanogaster
K. G. Guruharsha, J. -F. Rual, B. Zhai, J. Mintseris, P. Vaidya, N. Vaidya, C. Beekman, C. Wong, D. Y. Rhee, O. Cenaj, E. McKillip, S. Shah, M. Stapleton, K. H. Wan, C. Yu, B. Parsa, J. W. Carlson, X. Chen, B. Kapadia, K. VijayRaghavan, S. P. Gygi, S. E. Celniker, R. A. Obar, S. Artavanis-Tsakonas
Cell. Author manuscript; available in PMC 2012 Oct 28.
Published in final edited form as: Cell. 2011 Oct 28; 147(3): 690–703. doi: 10.1016/j.cell.2011.08.047
PMCID:
PMC3319048
AbstractArticlePDF–3.2M
20.
Survival Motor Neuron Protein Regulates Stem Cell Division, Proliferation, and Differentiation in Drosophila
Stuart J. Grice, Ji-Long Liu
PLoS Genet. 2011 Apr; 7(4): e1002030. Published online 2011 Apr 7. doi: 10.1371/journal.pgen.1002030
PMCID:
PMC3072375
AbstractArticlePDF–14M

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