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Items: 1 to 20 of 23

1.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
2.
Role of FEN1 S187 phosphorylation in counteracting oxygen-induced stress and regulating postnatal heart development
Lina Zhou, Huifang Dai, Jian Wu, Mian Zhou, Hua Yuan, Juan Du, Lu Yang, Xiwei Wu, Hong Xu, Yuejin Hua, Jian Xu, Li Zheng, Binghui Shen
FASEB J. 2017 Jan; 31(1): 132–147. Published online 2016 Sep 30. doi: 10.1096/fj.201600631R
PMCID:
PMC5161519
AbstractArticle
3.
The Polymerase Activity of Mammalian DNA Pol ζ Is Specifically Required for Cell and Embryonic Viability
Sabine S. Lange, Junya Tomida, Karen S. Boulware, Sarita Bhetawal, Richard D. Wood
PLoS Genet. 2016 Jan; 12(1): e1005759. Published online 2016 Jan 4. doi: 10.1371/journal.pgen.1005759
PMCID:
PMC4699697
AbstractArticlePDF–2.3M
4.
Ablation of XP-V gene causes adipose tissue senescence and metabolic abnormalities
Yih-Wen Chen, Robert A. Harris, Zafer Hatahet, Kai-ming Chou
Proc Natl Acad Sci U S A. 2015 Aug 18; 112(33): E4556–E4564. Published online 2015 Aug 3. doi: 10.1073/pnas.1506954112
PMCID:
PMC4547227
AbstractArticlePDF–2.3M
5.
siRNA screening identifies differences in the Fanconi anemia pathway in BALB/c-Trp53+/− with susceptibility versus C57BL/6-Trp53+/− mice with resistance to mammary tumors
M Böhringer, K Obermeier, N Griner, D Waldraff, E Dickinson, K Eirich, D Schindler, M Hagen, D J Jerry, L Wiesmüller
Oncogene. 2013 Nov 28; 32(48): 5458–5470. Published online 2013 Feb 25. doi: 10.1038/onc.2013.38
PMCID:
PMC3898496
AbstractArticlePDF–1.6M
6.
DNA polymerase ζ generates tandem mutations in immunoglobulin variable regions
Huseyin Saribasak, Robert W. Maul, Zheng Cao, William W. Yang, Dominik Schenten, Sven Kracker, Patricia J. Gearhart
J Exp Med. 2012 Jun 4; 209(6): 1075–1081. doi: 10.1084/jem.20112234
PMCID:
PMC3371727
AbstractArticlePDF–1.2M
7.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
8.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
9.
Highly error-free role of DNA polymerase η in the replicative bypass of UV-induced pyrimidine dimers in mouse and human cells
Jung-Hoon Yoon, Louise Prakash, Satya Prakash
Proc Natl Acad Sci U S A. 2009 Oct 27; 106(43): 18219–18224. Published online 2009 Oct 12. doi: 10.1073/pnas.0910121106
PMCID:
PMC2775276
AbstractArticlePDF–709K
10.
Reevaluation of the role of DNA polymerase ? in somatic hypermutation of immunoglobulin genes
Stella A. Martomo, Huseyin Saribasak, Masayuki Yokoi, Fumio Hanaoka, Patricia J. Gearhart
DNA Repair (Amst) Author manuscript; available in PMC 2009 Sep 1.
Published in final edited form as: DNA Repair (Amst). 2008 Sep 1; 7(9): 1603–1608. Published online 2008 May 16. doi: 10.1016/j.dnarep.2008.04.002
PMCID:
PMC2561943
AbstractArticlePDF–344K
11.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
12.
Contribution of DNA polymerase η to immunoglobulin gene hypermutation in the mouse
Frédéric Delbos, Annie De Smet, Ahmad Faili, Said Aoufouchi, Jean-Claude Weill, Claude-Agnès Reynaud
J Exp Med. 2005 Apr 18; 201(8): 1191–1196. doi: 10.1084/jem.20050292
PMCID:
PMC2213152
AbstractArticlePDF–712K
13.
DNA polymerase η is the sole contributor of A/T modifications during immunoglobulin gene hypermutation in the mouse
Frédéric Delbos, Said Aoufouchi, Ahmad Faili, Jean-Claude Weill, Claude-Agnès Reynaud
J Exp Med. 2007 Jan 22; 204(1): 17–23. doi: 10.1084/jem.20062131
PMCID:
PMC2118439
AbstractArticlePDF–730K
14.
Participation of mouse DNA polymerase ι in strand-biased mutagenic bypass of UV photoproducts and suppression of skin cancer
Chad A. Dumstorf, Alan B. Clark, Qingcong Lin, Grace E. Kissling, Tao Yuan, Raju Kucherlapati, W. Glenn McGregor, Thomas A. Kunkel
Proc Natl Acad Sci U S A. 2006 Nov 28; 103(48): 18083–18088. Published online 2006 Nov 17. doi: 10.1073/pnas.0605247103
PMCID:
PMC1838710
AbstractArticlePDF–356K
15.
UV-B Radiation Induces Epithelial Tumors in Mice Lacking DNA Polymerase η and Mesenchymal Tumors in Mice Deficient for DNA Polymerase ι
Tsuyoshi Ohkumo, Yuji Kondo, Masayuki Yokoi, Tetsuya Tsukamoto, Ayumi Yamada, Taiki Sugimoto, Rie Kanao, Yujiro Higashi, Hisato Kondoh, Masae Tatematsu, Chikahide Masutani, Fumio Hanaoka
Mol Cell Biol. 2006 Oct; 26(20): 7696–7706. doi: 10.1128/MCB.01076-06
PMCID:
PMC1636855
AbstractArticlePDF–784K
16.
Different mutation signatures in DNA polymerase η- and MSH6-deficient mice suggest separate roles in antibody diversification
Stella A. Martomo, William W. Yang, Robert P. Wersto, Tsuyoshi Ohkumo, Yuji Kondo, Masayuki Yokoi, Chikahide Masutani, Fumio Hanaoka, Patricia J. Gearhart
Proc Natl Acad Sci U S A. 2005 Jun 14; 102(24): 8656–8661. Published online 2005 Jun 6. doi: 10.1073/pnas.0501852102
PMCID:
PMC1150827
AbstractArticlePDF–476K
17.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
18.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
19.
Mouse Rev1 protein interacts with multiple DNA polymerases involved in translesion DNA synthesis
Caixia Guo, Paula L. Fischhaber, Margaret J. Luk-Paszyc, Yuji Masuda, Jing Zhou, Kenji Kamiya, Caroline Kisker, Errol C. Friedberg
EMBO J. 2003 Dec 15; 22(24): 6621–6630. doi: 10.1093/emboj/cdg626
PMCID:
PMC291821
AbstractArticlePDF–471K
20.
Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention
Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands
Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100
Correction in:
Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.
PMCID:
PMC283554
AbstractArticlePDF–481K

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