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Items: 1 to 20 of 38

1.
A comprehensive Drosophila resource to identify key functional interactions between SARS-CoV-2 factors and host proteins
Annabel Guichard, Shenzhao Lu, Oguz Kanca, Daniel Bressan, Yan Huang, Mengqi Ma, Sara Sanz Juste, Jonathan C. Andrews, Kristy L. Jay, Marketta Sneider, Ruth Schwartz, Mei-Chu Huang, Danqing Bei, Hongling Pan, Liwen Ma, Wen-Wen Lin, Ankush Auradkar, Pranjali Bhagwat, Soo Park, Kenneth H. Wan, Takashi Ohsako, Toshiyuki Takano-Shimizu, Susan E. Celniker, Michael F. Wangler, Shinya Yamamoto, Hugo J. Bellen, Ethan Bier
Cell Rep. Author manuscript; available in PMC 2024 Mar 25.
Published in final edited form as: Cell Rep. 2023 Aug 29; 42(8): 112842. Published online 2023 Jul 20. doi: 10.1016/j.celrep.2023.112842
PMCID:
PMC10962759
AbstractArticlePDF–3.0M
2.
Shared enhancer gene regulatory networks between wound and oncogenic programs
Swann Floc'hlay, Ramya Balaji, Dimitrije Stanković, Valerie M Christiaens, Carmen Bravo González-Blas, Seppe De Winter, Gert J Hulselmans, Maxime De Waegeneer, Xiaojiang Quan, Duygu Koldere, Mardelle Atkins, Georg Halder, Mirka Uhlirova, Anne-Kathrin Classen, Stein Aerts
eLife. 2023; 12: e81173. Published online 2023 May 3. doi: 10.7554/eLife.81173
PMCID:
PMC10238094
AbstractArticlePDF–8.8M
3.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
4.
Reducing ether lipids improves Drosophila overnutrition-associated pathophysiology phenotypes via a switch from lipid storage to beta-oxidation
Christie Santoro, Ashley O’Toole, Pilar Finsel, Arsalan Alvi, Laura Palanker Musselman
Sci Rep. 2022; 12: 13021. Published online 2022 Jul 29. doi: 10.1038/s41598-022-16870-4
PMCID:
PMC9338069
AbstractArticlePDF–3.2M
5.
An expanded toolkit for Drosophila gene tagging using synthesized homology donor constructs for CRISPR-mediated homologous recombination
Oguz Kanca, Jonathan Zirin, Yanhui Hu, Burak Tepe, Debdeep Dutta, Wen-Wen Lin, Liwen Ma, Ming Ge, Zhongyuan Zuo, Lu-Ping Liu, Robert W Levis, Norbert Perrimon, Hugo J Bellen
eLife. 2022; 11: e76077. Published online 2022 Jun 20. doi: 10.7554/eLife.76077
PMCID:
PMC9239680
AbstractArticlePDF–1.2M
6.
microRNA-252 and FoxO repress inflammaging by a dual inhibitory mechanism on Dawdle-mediated TGF-β pathway in Drosophila
Xiaofen Wu, Kongyan Niu, Xiaofan Wang, Jing Zhao, Han Wang, Dean Li, Hui Wang, Ting Miao, Yun Yang, Huanhuan Ma, Yaoyang Zhang, Lei Pan, Rui Liu, Hua Bai, Nan Liu
Genetics. 2022 Mar; 220(3): iyab234. Published online 2021 Dec 21. doi: 10.1093/genetics/iyab234
PMCID:
PMC9208648
AbstractArticlePDF–1.5M
7.
RNA degradation is required for the germ-cell to maternal transition in Drosophila
Patrick Blatt, Siu Wah Wong-Deyrup, Alicia McCarthy, Shane Breznak, Matthew D. Hurton, Maitreyi Upadhyay, Benjamin Bennink, Justin Camacho, Miler T. Lee, Prashanth Rangan
Curr Biol. Author manuscript; available in PMC 2021 Jul 29.
Published in final edited form as: Curr Biol. 2021 Jul 26; 31(14): 2984–2994.e7. Published online 2021 May 13. doi: 10.1016/j.cub.2021.04.052
PMCID:
PMC8319052
AbstractArticlePDF–2.2M
8.
Advances in deciphering the genetic basis of insect cuticular hydrocarbon biosynthesis and variation
Henrietta Holze, Lukas Schrader, Jan Buellesbach
Heredity (Edinb) 2021 Feb; 126(2): 219–234. Published online 2020 Nov 2. doi: 10.1038/s41437-020-00380-y
PMCID:
PMC8027674
AbstractArticlePDF–1.0M
9.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
10.
Birth-and-Death Evolution of the Fatty Acyl-CoA Reductase (FAR) Gene Family and Diversification of Cuticular Hydrocarbon Synthesis in Drosophila
Cédric Finet, Kailey Slavik, Jian Pu, Sean B Carroll, Henry Chung
Genome Biol Evol. 2019 Jun; 11(6): 1541–1551. Published online 2019 May 10. doi: 10.1093/gbe/evz094
PMCID:
PMC6546124
AbstractArticlePDF–1.0M
11.
Drosophila mRNA Localization During Later Development: Past, Present, and Future
Sarah C. Hughes, Andrew J. Simmonds
Front Genet. 2019; 10: 135. Published online 2019 Mar 7. doi: 10.3389/fgene.2019.00135
PMCID:
PMC6416162
AbstractArticlePDF–1.1M
12.
The impact of genome variation and diet on the metabolic phenotype and microbiome composition of Drosophila melanogaster
Lisa Jehrke, Fiona A. Stewart, Andrea Droste, Mathias Beller
Sci Rep. 2018; 8: 6215. Published online 2018 Apr 18. doi: 10.1038/s41598-018-24542-5
PMCID:
PMC5906449
AbstractArticlePDF–4.5M
13.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
14.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
15.
Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster
Peter A. Combs, Michael B. Eisen
Version 1. F1000Res. 2017; 6: 41. Published online 2017 Jan 12. doi: 10.12688/f1000research.9720.1
PMCID:
PMC5325077
AbstractArticlePDF–10M
16.
Latitudinal clines in gene expression and cis-regulatory element variation in Drosophila melanogaster
Punita Juneja, Andrew Quinn, Francis M. Jiggins
BMC Genomics. 2016; 17: 981. Published online 2016 Nov 28. doi: 10.1186/s12864-016-3333-7
PMCID:
PMC5126864
AbstractArticlePDF–1.1M
17.
mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster
Gildas Lepennetier, Francesco Catania
G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231
PMCID:
PMC4889658
AbstractArticlePDF–1.5M
18.
RNA-seq reveals post-transcriptional regulation of Drosophila insulin-like peptide dilp8 and the neuropeptide-like precursor Nplp2 by the exoribonuclease Pacman/XRN1
Christopher I. Jones, Amy L. Pashler, Benjamin P. Towler, Sophie R. Robinson, Sarah F. Newbury
Nucleic Acids Res. 2016 Jan 8; 44(1): 267–280. Published online 2015 Dec 9. doi: 10.1093/nar/gkv1336
PMCID:
PMC4705666
AbstractArticlePDF–7.5M
19.
Proteomic Analysis of the Ubiquitin Landscape in the Drosophila Embryonic Nervous System and the Adult Photoreceptor Cells
Juanma Ramirez, Aitor Martinez, Benoit Lectez, So Young Lee, Maribel Franco, Rosa Barrio, Gunnar Dittmar, Ugo Mayor
PLoS One. 2015; 10(10): e0139083. Published online 2015 Oct 13. doi: 10.1371/journal.pone.0139083
PMCID:
PMC4604154
AbstractArticlePDF–3.1M
20.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M

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