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Items: 1 to 20 of 51

1.
Double-strand breaks in facultative heterochromatin require specific movements and chromatin changes for efficient repair
Marieke R. Wensveen, Aditya A. Dixit, Robin van Schendel, Apfrida Kendek, Jan-Paul Lambooij, Marcel Tijsterman, Serafin U. Colmenares, Aniek Janssen
Nat Commun. 2024; 15: 8984. Published online 2024 Oct 17. doi: 10.1038/s41467-024-53313-2
PMCID:
PMC11487122
AbstractArticlePDF–1.9M
2.
Prevalent Fast Evolution of Genes Involved in Heterochromatin Functions
Leila Lin, Yuheng Huang, Jennifer McIntyre, Ching-Ho Chang, Serafin Colmenares, Yuh Chwen G Lee
Mol Biol Evol. 2024 Sep; 41(9): msae181. Published online 2024 Aug 27. doi: 10.1093/molbev/msae181
PMCID:
PMC11408610
AbstractArticlePDF–1.6M
3.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
4.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
5.
Optimal RNA binding by Egalitarian, a Dynein cargo adaptor, is critical for maintaining oocyte fate in Drosophila
Chandler H. Goldman, Hannah Neiswender, Frederick Baker, Rajalakshmi Veeranan-Karmegam, Saurav Misra, Graydon B. Gonsalvez
RNA Biol. 2021; 18(12): 2376–2389. Published online 2021 Apr 27. doi: 10.1080/15476286.2021.1914422
PMCID:
PMC8632098
AbstractArticlePDF–19M
6.
Dynein light chain-dependent dimerization of Egalitarian is essential for maintaining oocyte fate in Drosophila
Hannah Neiswender, Chandler H. Goldman, Rajalakshmi Veeranan-Karmegam, Graydon B. Gonsalvez
Dev Biol. Author manuscript; available in PMC 2022 Oct 1.
Published in final edited form as: Dev Biol. 2021 Oct; 478: 76–88. Published online 2021 Jun 25. doi: 10.1016/j.ydbio.2021.06.009
PMCID:
PMC8374726
AbstractArticlePDF–4.0M
7.
VCP maintains nuclear size by regulating the DNA damage-associated MDC1–p53–autophagy axis in Drosophila
Ya-Chu Chang, Yu-Xiang Peng, Bo-Hua Yu, Henry C. Chang, Pei-Shin Liang, Ting-Yi Huang, Chao-Jie Shih, Li-An Chu, Tzu-Kang Sang
Nat Commun. 2021; 12: 4258. Published online 2021 Jul 12. doi: 10.1038/s41467-021-24556-0
PMCID:
PMC8275807
AbstractArticlePDF–5.6M
8.
Insights into HP1a-Chromatin Interactions
Silvia Meyer-Nava, Victor E. Nieto-Caballero, Mario Zurita, Viviana Valadez-Graham
Cells. 2020 Aug; 9(8): 1866. Published online 2020 Aug 9. doi: 10.3390/cells9081866
PMCID:
PMC7465937
AbstractArticlePDF–2.2M
9.
Identification of novel genes associated with longevity in Drosophila melanogaster - a computational approach
Bethany S. Hall, Yvonne A. Barnett, Jonathan J. Crofts, Nadia Chuzhanova
Aging (Albany NY) 2019 Dec 15; 11(23): 11244–11267. Published online 2019 Dec 3. doi: 10.18632/aging.102527
PMCID:
PMC6932890
AbstractArticlePDF–1.2M
10.
Arp2/3 and Unc45 maintain heterochromatin stability in Drosophila polytene chromosomes
George Dialynas, Laetitia Delabaere, Irene Chiolo
Exp Biol Med (Maywood) 2019 Nov; 244(15): 1362–1371. Published online 2019 Jul 31. doi: 10.1177/1535370219862282
PMCID:
PMC6880141
AbstractArticlePDF–1.0M
11.
Timely double-strand break repair and pathway choice in pericentromeric heterochromatin depend on the histone demethylase dKDM4A
Aniek Janssen, Serafin U. Colmenares, Timothy Lee, Gary H. Karpen
Genes Dev. 2019 Jan 1; 33(1-2): 103–115. doi: 10.1101/gad.317537.118
PMCID:
PMC6317320
AbstractArticlePDF–2.1M
12.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
13.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
14.
Drosophila histone demethylase KDM4A has enzymatic and non-enzymatic roles in controlling heterochromatin integrity
Serafin U. Colmenares, Joel M. Swenson, Sasha A. Langley, Cameron Kennedy, Sylvain V. Costes, Gary H. Karpen
Dev Cell. Author manuscript; available in PMC 2018 Jul 24.
Published in final edited form as: Dev Cell. 2017 Jul 24; 42(2): 156–169.e5. doi: 10.1016/j.devcel.2017.06.014
PMCID:
PMC5572651
AbstractArticlePDF–1.3M
15.
Nuclear Dynamics of Heterochromatin Repair
Nuno Amaral, Taehyun Ryu, Xiao Li, Irene Chiolo
Trends Genet. Author manuscript; available in PMC 2018 Feb 1.
Published in final edited form as: Trends Genet. 2017 Feb; 33(2): 86–100. Published online 2017 Jan 16. doi: 10.1016/j.tig.2016.12.004
PMCID:
PMC5285325
AbstractArticlePDF–854K
16.
The mRNA transportome of the BicD/Egl transport machinery
Paula Vazquez-Pianzola, Bogdan Schaller, Martino Colombo, Dirk Beuchle, Samuel Neuenschwander, Anne Marcil, Rémy Bruggmann, Beat Suter
RNA Biol. 2017; 14(1): 73–89. Published online 2016 Nov 1. doi: 10.1080/15476286.2016.1251542
PMCID:
PMC5270521
AbstractArticlePDF–2.1M
17.
Latitudinal clines in gene expression and cis-regulatory element variation in Drosophila melanogaster
Punita Juneja, Andrew Quinn, Francis M. Jiggins
BMC Genomics. 2016; 17: 981. Published online 2016 Nov 28. doi: 10.1186/s12864-016-3333-7
PMCID:
PMC5126864
AbstractArticlePDF–1.1M
18.
A single double-strand break system reveals repair dynamics and mechanisms in heterochromatin and euchromatin
Aniek Janssen, Gregory A. Breuer, Eva K. Brinkman, Annelot I. van der Meulen, Sean V. Borden, Bas van Steensel, Ranjit S. Bindra, Jeannine R. LaRocque, Gary H. Karpen
Genes Dev. 2016 Jul 15; 30(14): 1645–1657. doi: 10.1101/gad.283028.116
PMCID:
PMC4973294
AbstractArticlePDF–1010K
19.
The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster
Nicolas Svetec, Julie M. Cridland, Li Zhao, David J. Begun
PLoS Genet. 2016 Mar; 12(3): e1005869. Published online 2016 Mar 7. doi: 10.1371/journal.pgen.1005869
PMCID:
PMC4780809
AbstractArticlePDF–543K
20.
Heterochromatic breaks move to the nuclear periphery to continue recombinational repair
Taehyun Ryu, Brett Spatola, Laetitia Delabaere, Katherine Bowlin, Hannah Hopp, Ryan Kunitake, Gary H. Karpen, Irene Chiolo
Nat Cell Biol. Author manuscript; available in PMC 2016 May 1.
Published in final edited form as: Nat Cell Biol. 2015 Nov; 17(11): 1401–1411. Published online 2015 Oct 26. doi: 10.1038/ncb3258
PMCID:
PMC4628585
AbstractArticlePDF–2.5M

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