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Items: 1 to 20 of 30

1.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
2.
A dual role of lola in Drosophila ovary development: regulating stem cell niche establishment and repressing apoptosis
Ting Zhao, Yanhong Xiao, Bo Huang, Mao-Jiu Ran, Xin Duan, Yu-Feng Wang, Yuzhen Lu, Xiao-Qiang Yu
Cell Death Dis. 2022 Sep; 13(9): 756. Published online 2022 Sep 2. doi: 10.1038/s41419-022-05195-9
PMCID:
PMC9440207
AbstractArticlePDF–7.1M
3.
A behavioral screen for mediators of age-dependent TDP-43 neurodegeneration identifies SF2/SRSF1 among a group of potent suppressors in both neurons and glia
Jorge Azpurua, Enas Gad El-Karim, Marvel Tranquille, Josh Dubnau
PLoS Genet. 2021 Nov; 17(11): e1009882. Published online 2021 Nov 1. doi: 10.1371/journal.pgen.1009882
PMCID:
PMC8584670
AbstractArticlePDF–1.4M
4.
Direct Testing for Allele-Specific Expression Differences Between Conditions
Luis León-Novelo, Alison R. Gerken, Rita M. Graze, Lauren M. McIntyre, Fabio Marroni
G3 (Bethesda) 2018 Feb; 8(2): 447–460. Published online 2017 Nov 22. doi: 10.1534/g3.117.300139
PMCID:
PMC5919738
AbstractArticlePDF–2.2M
5.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
6.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
7.
mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster
Gildas Lepennetier, Francesco Catania
G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231
PMCID:
PMC4889658
AbstractArticlePDF–1.5M
8.
Recruitment of Mediator Complex by Cell Type and Stage-Specific Factors Required for Tissue-Specific TAF Dependent Gene Activation in an Adult Stem Cell Lineage
Chenggang Lu, Margaret T. Fuller
PLoS Genet. 2015 Dec; 11(12): e1005701. Published online 2015 Dec 1. doi: 10.1371/journal.pgen.1005701
PMCID:
PMC4666660
AbstractArticlePDF–2.3M
9.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
10.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
11.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
12.
Two rapidly evolving genes contribute to male fitness in Drosophila
Josephine A Reinhardt, Corbin D Jones
J Mol Evol. Author manuscript; available in PMC 2014 Dec 1.
Published in final edited form as: J Mol Evol. 2013 Dec; 77(0): 10.1007/s00239-013-9594-8. Published online 2013 Nov 13. doi: 10.1007/s00239-013-9594-8
PMCID:
PMC3880551
AbstractArticlePDF–4.6M
13.
p120 Catenin Is Required for the Stress Response in Drosophila
Rhoda K. Stefanatos, Christin Bauer, Marcos Vidal
PLoS One. 2013; 8(12): e83942. Published online 2013 Dec 12. doi: 10.1371/journal.pone.0083942
PMCID:
PMC3861524
AbstractArticlePDF–2.3M
14.
De Novo ORFs in Drosophila Are Important to Organismal Fitness and Evolved Rapidly from Previously Non-coding Sequences
Josephine A. Reinhardt, Betty M. Wanjiru, Alicia T. Brant, Perot Saelao, David J. Begun, Corbin D. Jones
PLoS Genet. 2013 Oct; 9(10): e1003860. Published online 2013 Oct 17. doi: 10.1371/journal.pgen.1003860
PMCID:
PMC3798262
AbstractArticlePDF–1.6M
15.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
16.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
17.
Transcriptional regulation during Drosophila spermatogenesis
Cindy Lim, Lama Tarayrah, Xin Chen
Spermatogenesis. 2012 Jul 1; 2(3): 158–166. doi: 10.4161/spmg.21775
PMCID:
PMC3469439
AbstractArticlePDF–649K
18.
Wake-up-call, a lin-52 paralogue, and Always early, a lin-9 homologue physically interact, but have opposing functions in regulating testis-specific gene expression
Karen Doggett, Jianqiao Jiang, Gajender Aleti, Helen White-Cooper
Dev Biol. 2011 Jul 15; 355(2-2): 381–393. doi: 10.1016/j.ydbio.2011.04.030
PMCID:
PMC3123737
AbstractArticle
19.
Sequential changes at differentiation gene promoters as they become active in a stem cell lineage
Xin Chen, Chenggang Lu, Jose Rafael Morillo Prado, Suk Ho Eun, Margaret T. Fuller
Development. 2011 Jun 15; 138(12): 2441–2450. doi: 10.1242/dev.056572
PMCID:
PMC3100706
AbstractArticle
20.
Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin
Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker
Science. Author manuscript; available in PMC 2010 Feb 19.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816
PMCID:
PMC2825053
AbstractArticlePDF–858K

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