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Items: 1 to 20 of 35

1.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
2.
A Candidate RNAi Screen Reveals Diverse RNA-Binding Protein Phenotypes in Drosophila Flight Muscle
Shao-Yen Kao, Elena Nikonova, Sabrina Chaabane, Albiona Sabani, Alexandra Martitz, Anja Wittner, Jakob Heemken, Tobias Straub, Maria L. Spletter
Cells. 2021 Oct; 10(10): 2505. Published online 2021 Sep 22. doi: 10.3390/cells10102505
PMCID:
PMC8534295
AbstractArticlePDF–9.7M
3.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
4.
Splicing factors Sf3A2 and Prp31 have direct roles in mitotic chromosome segregation
Claudia Pellacani, Elisabetta Bucciarelli, Fioranna Renda, Daniel Hayward, Antonella Palena, Jack Chen, Silvia Bonaccorsi, James G Wakefield, Maurizio Gatti, Maria Patrizia Somma
eLife. 2018; 7: e40325. Published online 2018 Nov 26. doi: 10.7554/eLife.40325
PMCID:
PMC6287947
AbstractArticlePDF–8.6M
5.
The output of protein-coding genes shifts to circular RNAs when the pre-mRNA processing machinery is limiting
Dongming Liang, Deirdre C. Tatomer, Zheng Luo, Huang Wu, Li Yang, Ling-Ling Chen, Sara Cherry, Jeremy E. Wilusz
Mol Cell. Author manuscript; available in PMC 2018 Dec 7.
Published in final edited form as: Mol Cell. 2017 Dec 7; 68(5): 940–954.e3. Published online 2017 Nov 22. doi: 10.1016/j.molcel.2017.10.034
PMCID:
PMC5728686
AbstractArticlePDF–3.1M
6.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
7.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
8.
The spliceosomal protein SF3B5 is a novel component of Drosophila SAGA that functions in gene expression independent of splicing
Rachel Stegeman, Peyton J. Spreacker, Selene K. Swanson, Robert Stephenson, Laurence Florens, Michael P. Washburn, Vikki M. Weake
J Mol Biol. Author manuscript; available in PMC 2017 Sep 11.
Published in final edited form as: J Mol Biol. 2016 Sep 11; 428(18): 3632–3649. Published online 2016 May 13. doi: 10.1016/j.jmb.2016.05.009
PMCID:
PMC5011000
AbstractArticlePDF–1.3M
9.
A Quantitative Genomic Approach for Analysis of Fitness and Stress Related Traits in a Drosophila melanogaster Model Population
Palle Duun Rohde, Kristian Krag, Volker Loeschcke, Johannes Overgaard, Peter Sørensen, Torsten Nygaard Kristensen
Int J Genomics. 2016; 2016: 2157494. Published online 2016 Apr 19. doi: 10.1155/2016/2157494
PMCID:
PMC4853962
AbstractArticlePDF–1.0M
10.
Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes
Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili
Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062
PMCID:
PMC4738005
AbstractArticlePDF–205K
11.
spenito is required for sex determination in Drosophila melanogaster
Dong Yan, Norbert Perrimon
Proc Natl Acad Sci U S A. 2015 Sep 15; 112(37): 11606–11611. Published online 2015 Aug 31. doi: 10.1073/pnas.1515891112
PMCID:
PMC4577178
AbstractArticlePDF–1.9M
12.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
13.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
14.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
15.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
16.
Identification of Novel Elements of the Drosophila Blisterome Sheds Light on Potential Pathological Mechanisms of Several Human Diseases
Oleksii Bilousov, Alexey Koval, Amiran Keshelava, Vladimir L. Katanaev
PLoS One. 2014; 9(6): e101133. Published online 2014 Jun 26. doi: 10.1371/journal.pone.0101133
PMCID:
PMC4072764
AbstractArticlePDF–2.2M
17.
A Functional Screen Reveals an Extensive Layer of Transcriptional and Splicing Control Underlying RAS/MAPK Signaling in Drosophila
Dariel Ashton-Beaucage, Christian M. Udell, Patrick Gendron, Malha Sahmi, Martin Lefrançois, Caroline Baril, Anne-Sophie Guenier, Jean Duchaine, Daniel Lamarre, Sébastien Lemieux, Marc Therrien
PLoS Biol. 2014 Mar; 12(3): e1001809. Published online 2014 Mar 18. doi: 10.1371/journal.pbio.1001809
PMCID:
PMC3958334
AbstractArticlePDF–4.0M
18.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
19.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
20.
A Protein Complex Network of Drosophila melanogaster
K. G. Guruharsha, J. -F. Rual, B. Zhai, J. Mintseris, P. Vaidya, N. Vaidya, C. Beekman, C. Wong, D. Y. Rhee, O. Cenaj, E. McKillip, S. Shah, M. Stapleton, K. H. Wan, C. Yu, B. Parsa, J. W. Carlson, X. Chen, B. Kapadia, K. VijayRaghavan, S. P. Gygi, S. E. Celniker, R. A. Obar, S. Artavanis-Tsakonas
Cell. Author manuscript; available in PMC 2012 Oct 28.
Published in final edited form as: Cell. 2011 Oct 28; 147(3): 690–703. doi: 10.1016/j.cell.2011.08.047
PMCID:
PMC3319048
AbstractArticlePDF–3.2M

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