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Select item 104151181.

Pyrimidine catabolism is required to prevent the accumulation of 5-methyluridine in RNA

Shangyu Gao, Yu Sun, Xiaoguang Chen, Changhua Zhu, Xiaoye Liu, Wenlei Wang, Lijun Gan, Yanwu Lu, Frank Schaarschmidt, Marco Herde, Claus-Peter Witte, Mingjia Chen

Nucleic Acids Res. 2023 Aug 11; 51(14): 7451–7464. Published online 2023 Jun 19. doi: 10.1093/nar/gkad529

PMCID:: PMC10415118

Abstract Article PDF–1.2M

Select item 80052112.

Regulation of DNA (de)Methylation Positively Impacts Seed Germination during Seed Development under Heat Stress

Jaiana Malabarba, David Windels, Wenjia Xu, Jerome Verdier

Genes (Basel) 2021 Mar; 12(3): 457. Published online 2021 Mar 23. doi: 10.3390/genes12030457

PMCID:: PMC8005211

Abstract Article PDF–3.7M

Select item 78806853.

The Arabidopsis active demethylase ROS1 cis-regulates defence genes by erasing DNA methylation at promoter-regulatory regions

Thierry Halter, Jingyu Wang, Delase Amesefe, Emmanuelle Lastrucci, Magali Charvin, Meenu Singla Rastogi, Lionel Navarro

eLife. 2021; 10: e62994. Published online 2021 Jan 20. doi: 10.7554/eLife.62994

PMCID:: PMC7880685

Abstract Article PDF–3.3M

Select item 61965284.

DNA demethylase ROS1 negatively regulates the imprinting of DOGL4 and seed dormancy in Arabidopsis thaliana

Haifeng Zhu, Wenxiang Xie, Dachao Xu, Daisuke Miki, Kai Tang, Chao-Feng Huang, Jian-Kang Zhu

Proc Natl Acad Sci U S A. 2018 Oct 16; 115(42): E9962–E9970. Published online 2018 Sep 28. doi: 10.1073/pnas.1812847115

PMCID:: PMC6196528

Abstract Article PDF–2.6M

Select item 51320695.

The role of DNA (de)methylation in immune responsiveness of Arabidopsis

Ana López Sánchez, Joost H.M. Stassen, Leonardo Furci, Lisa M. Smith, Jurriaan Ton

Plant J. 2016 Nov; 88(3): 361–374. Published online 2016 Sep 7. doi: 10.1111/tpj.13252

PMCID:: PMC5132069

Abstract Article PDF–847K

Select item 51237596.

The DNA demethylase ROS1 targets genomic regions with distinct chromatin modifications

Kai Tang, Zhaobo Lang, Heng Zhang, Jian-Kang Zhu

Nat Plants. Author manuscript; available in PMC 2017 Apr 30.

Published in final edited form as: Nat Plants. 2016 Oct 31; 2(11): 16169. Published online 2016 Oct 31. doi: 10.1038/nplants.2016.169

PMCID:: PMC5123759

Abstract Article PDF–1.7M

Select item 48722237.

The cytosolic Fe-S cluster assembly component MET18 is required for the full enzymatic activity of ROS1 in active DNA demethylation

Xiaokang Wang, Qi Li, Wei Yuan, Zhendong Cao, Bei Qi, Suresh Kumar, Yan Li, Weiqiang Qian

Sci Rep. 2016; 6: 26443. Published online 2016 May 19. doi: 10.1038/srep26443

PMCID:: PMC4872223

Abstract Article PDF–2.2M

Select item 46195988.

MET18 Connects the Cytosolic Iron-Sulfur Cluster Assembly Pathway to Active DNA Demethylation in Arabidopsis

Cheng-Guo Duan, Xingang Wang, Kai Tang, Huiming Zhang, Satendra K. Mangrauthia, Mingguang Lei, Chuan-Chih Hsu, Yueh-Ju Hou, Chunguo Wang, Yan Li, W. Andy Tao, Jian-Kang Zhu

PLoS Genet. 2015 Oct; 11(10): e1005559. Published online 2015 Oct 22. doi: 10.1371/journal.pgen.1005559

PMCID:: PMC4619598

Abstract Article PDF–4.7M

Select item 45669849.

AtROS1 overexpression provides evidence for epigenetic regulation of genes encoding enzymes of flavonoid biosynthesis and antioxidant pathways during salt stress in transgenic tobacco

Poonam Bharti, Monika Mahajan, Ajay K. Vishwakarma, Jyoti Bhardwaj, Sudesh Kumar Yadav

J Exp Bot. 2015 Sep; 66(19): 5959–5969. Published online 2015 Jun 25. doi: 10.1093/jxb/erv304

PMCID:: PMC4566984

Abstract Article PDF–1.9M

Select item 438047710.

Methylation-Sensitive Expression of a DNA Demethylase Gene Serves As an Epigenetic Rheostat

Ben P. Williams, Daniela Pignatta, Steven Henikoff, Mary Gehring

PLoS Genet. 2015 Mar; 11(3): e1005142. Published online 2015 Mar 31. doi: 10.1371/journal.pgen.1005142

PMCID:: PMC4380477

Abstract Article PDF–1.8M

Select item 428743511.

An AP Endonuclease Functions in Active DNA Demethylation and Gene Imprinting in Arabidopsis

Yan Li, Dolores Córdoba-Cañero, Weiqiang Qian, Xiaohong Zhu, Kai Tang, Huiming Zhang, Rafael R. Ariza, Teresa Roldán-Arjona, Jian-Kang Zhu

PLoS Genet. 2015 Jan; 11(1): e1004905. Published online 2015 Jan 8. doi: 10.1371/journal.pgen.1004905

Correction in:: PLoS Genet. 2015 Apr; 11(4): e1005198.

PMCID:: PMC4287435

Abstract Article PDF–1.5M

Select item 426035412.

SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis

Yong-Feng Han, Kun Dou, Ze-Yang Ma, Su-Wei Zhang, Huan-Wei Huang, Lin Li, Tao Cai, She Chen, Jian-Kang Zhu, Xin-Jian He

Cell Res. 2014 Dec; 24(12): 1445–1465. Published online 2014 Nov 25. doi: 10.1038/cr.2014.156

PMCID:: PMC4260354

Abstract Article PDF–3.6M

Select item 418918813.

DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis

Tuan-Ngoc Le, Ulrike Schumann, Neil A Smith, Sameer Tiwari, Phil Chi Khang Au, Qian-Hao Zhu, Jennifer M Taylor, Kemal Kazan, Danny J Llewellyn, Ren Zhang, Elizabeth S Dennis, Ming-Bo Wang

Genome Biol. 2014; 15(9): 458. Published online 2014 Sep 17. doi: 10.1186/s13059-014-0458-3

PMCID:: PMC4189188

Abstract Article PDF–2.0M

Select item 411495814.

REPRESSOR OF SILENCING5 Encodes a Member of the Small Heat Shock Protein Family and Is Required for DNA Demethylation in Arabidopsis

Yusheng Zhao, Shaojun Xie, Xiaojie Li, Chunlei Wang, Zhongzhou Chen, Jinsheng Lai, Zhizhong Gong

Plant Cell. 2014 Jun; 26(6): 2660–2675. Published online 2014 Jun 10. doi: 10.1105/tpc.114.126730

PMCID:: PMC4114958

Abstract Article PDF–2.0M

Select item 409711915.

Overproduction of stomatal lineage cells in Arabidopsis mutants defective in active DNA demethylation

Chizuko Yamamuro, Daisuke Miki, Zhimin Zheng, Jun Ma, Jing Wang, Zhenbiao Yang, Juan Dong, Jian-Kang Zhu

Nat Commun. Author manuscript; available in PMC 2014 Dec 5.

Published in final edited form as: Nat Commun. 2014; 5: 4062. Published online 2014 Jun 5. doi: 10.1038/ncomms5062

PMCID:: PMC4097119

Abstract Article PDF–1.4M

Select item 375338216.

Folate Polyglutamylation Is Involved in Chromatin Silencing by Maintaining Global DNA Methylation and Histone H3K9 Dimethylation in Arabidopsis

Hao-Ran Zhou, Fang-Fang Zhang, Ze-Yang Ma, Huan-Wei Huang, Ling Jiang, Tao Cai, Jian-Kang Zhu, Chuyi Zhang, Xin-Jian He

Plant Cell. 2013 Jul; 25(7): 2545–2559. Published online 2013 Jul 23. doi: 10.1105/tpc.113.114678

PMCID:: PMC3753382

Abstract Article PDF–1.4M

Select item 358140917.

The DNA Repair Protein XRCC1 Functions in the Plant DNA Demethylation Pathway by Stimulating Cytosine Methylation (5-meC) Excision, Gap Tailoring, and DNA Ligation

María Isabel Martínez-Macías, Dolores Córdoba-Cañero, Rafael R. Ariza, Teresa Roldán-Arjona

J Biol Chem. 2013 Feb 22; 288(8): 5496–5505. Published online 2013 Jan 11. doi: 10.1074/jbc.M112.427617

PMCID:: PMC3581409

Abstract Article PDF–2.1M

Select item 339649718.

Antisilencing role of the RNA-directed DNA methylation pathway and a histone acetyltransferase in Arabidopsis

Xiaojie Li, Weiqiang Qian, Yusheng Zhao, Chunlei Wang, Jie Shen, Jian-Kang Zhu, Zhizhong Gong

Proc Natl Acad Sci U S A. 2012 Jul 10; 109(28): 11425–11430. Published online 2012 Jun 25. doi: 10.1073/pnas.1208557109

PMCID:: PMC3396497

Abstract Article PDF–817K

Select item 327872119.

A DNA 3′-phosphatase functions in active DNA demethylation in Arabidopsis

María Isabel Martínez-Macías, Weiqiang Qian, Daisuke Miki, Olga Pontes, Yunhua Liu, Kai Tang, Renyi Liu, Teresa Morales-Ruiz, Rafael R. Ariza, Teresa Roldán-Arjona, Jian-Kang Zhu

Mol Cell. Author manuscript; available in PMC 2013 Feb 10.

Published in final edited form as: Mol Cell. 2012 Feb 10; 45(3): 357–370. doi: 10.1016/j.molcel.2011.11.034