PMC Links for GEO Profiles (Select 27554344) - PMC

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Items: 15

Select item 115050791.

Identification of 4 novel human ocular coloboma genes ANK3, BMPR1B, PDGFRA, and CDH4 through evolutionary conserved vertebrate gene analysis

Nicholas Owen, Maria Toms, Rodrigo M. Young, Jonathan Eintracht, Hajrah Sarkar, Brian P. Brooks, Mariya Moosajee

Genet Med. Author manuscript; available in PMC 2024 Oct 25.

Published in final edited form as: Genet Med. 2022 May; 24(5): 1073–1084. Published online 2022 Jan 13. doi: 10.1016/j.gim.2021.12.014

PMCID:: PMC11505079

Abstract Article PDF–1.2M

Select item 107716292.

Conditional, tissue-specific CRISPR/Cas9 vector system in zebrafish reveals the role of neuropilin-1b in heart regeneration

Ramcharan Singh Angom, Ying Wang, Enfeng Wang, Shamit Dutta, Debabrata Mukhopadhyay

Arterioscler Thromb Vasc Biol. Author manuscript; available in PMC 2024 Oct 1.

Published in final edited form as: Arterioscler Thromb Vasc Biol. 2023 Oct; 43(10): 1921–1934. Published online 2023 Aug 31. doi: 10.1161/ATVBAHA.123.319189

PMCID:: PMC10771629

Abstract Article PDF–2.6M

Select item 106900553.

Sclerotome-derived PDGF signaling functions as a niche cue responsible for primitive erythropoiesis

Aihua Mao, Zhuyun Li, Guozhu Ning, Zhengrong Zhou, Chiju Wei, Jianchao Li, Xinyu He, Qiang Wang

Development. 2023 Nov 15; 150(22): dev201807. Published online 2023 Nov 16. doi: 10.1242/dev.201807

PMCID:: PMC10690055

Abstract Article

Select item 78806834.

SATB2 induction of a neural crest mesenchyme-like program drives melanoma invasion and drug resistance

Maurizio Fazio, Ellen van Rooijen, Michelle Dang, Glenn van de Hoek, Julien Ablain, Jeffrey K Mito, Song Yang, Andrew Thomas, Jonathan Michael, Tania Fabo, Rodsy Modhurima, Patrizia Pessina, Charles K Kaufman, Yi Zhou, Richard M White, Leonard I Zon

eLife. 2021; 10: e64370. Published online 2021 Feb 2. doi: 10.7554/eLife.64370

PMCID:: PMC7880683

Abstract Article PDF–5.7M

Select item 70474095.

Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility

Hyung Joo Lee, Yiran Hou, Yujie Chen, Zea Z. Dailey, Aiyana Riddihough, Hyo Sik Jang, Ting Wang, Stephen L. Johnson

Genome Biol. 2020; 21: 52. Published online 2020 Feb 27. doi: 10.1186/s13059-020-1948-0

PMCID:: PMC7047409

Abstract Article PDF–4.5M

Select item 66336006.

Neuropilin 1 mediates epicardial activation and revascularization in the regenerating zebrafish heart

Vanessa Lowe, Laura Wisniewski, Jacob Sayers, Ian Evans, Paul Frankel, Nadia Mercader-Huber, Ian C. Zachary, Caroline Pellet-Many

Development. 2019 Jul 1; 146(13): dev174482. Published online 2019 Jul 2. doi: 10.1242/dev.174482

PMCID:: PMC6633600

Abstract Article

Select item 54237747.

A novel perivascular cell population in the zebrafish brain

Marina Venero Galanternik, Daniel Castranova, Aniket V Gore, Nathan H Blewett, Hyun Min Jung, Amber N Stratman, Martha R Kirby, James Iben, Mayumi F Miller, Koichi Kawakami, Richard J Maraia, Brant M Weinstein

eLife. 2017; 6: e24369. Published online 2017 Apr 11. doi: 10.7554/eLife.24369

PMCID:: PMC5423774

Abstract Article PDF–8.8M

Select item 52988788.

Platelet-derived growth factor (PDGF) signaling directs cardiomyocyte movement toward the midline during heart tube assembly

Joshua Bloomekatz, Reena Singh, Owen WJ Prall, Ariel C Dunn, Megan Vaughan, Chin-San Loo, Richard P Harvey, Deborah Yelon

eLife. 2017; 6: e21172. Published online 2017 Jan 18. doi: 10.7554/eLife.21172

PMCID:: PMC5298878

Abstract Article PDF–5.9M

Select item 49201589.

Bmp signaling mediates endoderm pouch morphogenesis by regulating Fgf signaling in zebrafish

C. Ben Lovely, Mary E. Swartz, Neil McCarthy, Jacqueline L. Norrie, Johann K. Eberhart

Development. 2016 Jun 1; 143(11): 2000–2011. doi: 10.1242/dev.129379

PMCID:: PMC4920158

Abstract Article

Select item 487073210.

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database

Jeremy Pasquier, Cédric Cabau, Thaovi Nguyen, Elodie Jouanno, Dany Severac, Ingo Braasch, Laurent Journot, Pierre Pontarotti, Christophe Klopp, John H. Postlethwait, Yann Guiguen, Julien Bobe

BMC Genomics. 2016; 17: 368. Published online 2016 May 18. doi: 10.1186/s12864-016-2709-z

PMCID:: PMC4870732

Abstract Article PDF–1.8M

Select item 322950011.

Aberrant Hedgehog Ligands Induce Progressive Pancreatic Fibrosis by Paracrine Activation of Myofibroblasts and Ductular Cells in Transgenic Zebrafish

In Hye Jung, Dawoon E. Jung, Young Nyun Park, Si Young Song, Seung Woo Park

PLoS One. 2011; 6(12): e27941. Published online 2011 Dec 2. doi: 10.1371/journal.pone.0027941

PMCID:: PMC3229500

Abstract Article PDF–9.3M

Select item 317805912.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 274760113.

MicroRNA Mirn140 modulates Pdgf signaling during palatogenesis

Johann K. Eberhart, Xinjun He, Mary E. Swartz, Yi-Lin Yan, Hao Song, Taylor C. Boling, Allison K. Kunerth, Macie B. Walker, Charles B. Kimmel, John H. Postlethwait

Nat Genet. Author manuscript; available in PMC 2009 Sep 21.

Published in final edited form as: Nat Genet. 2008 Mar; 40(3): 290–298. Published online 2008 Feb 10. doi: 10.1038/ng.82

PMCID:: PMC2747601

Abstract Article PDF–7.2M

Select item 52895914.

Hematopoietic gene expression profile in zebrafish kidney marrow

Huai-Dong Song, Xiao-Jian Sun, Min Deng, Guo-Wei Zhang, Yi Zhou, Xin-Yan Wu, Yan Sheng, Yi Chen, Zheng Ruan, Chun-Lei Jiang, Hui-Yong Fan, Leonard I. Zon, John P. Kanki, Ting Xi Liu, A. Thomas Look, Zhu Chen

Proc Natl Acad Sci U S A. 2004 Nov 16; 101(46): 16240–16245. Published online 2004 Nov 1. doi: 10.1073/pnas.0407241101