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Select item 100106871.

A transcriptional constraint mechanism limits the homeostatic response to activity deprivation in mammalian neocortex

Vera Valakh, Derek Wise, Xiaoyue Aelita Zhu, Mingqi Sha, Jaidyn Fok, Stephen D Van Hooser, Robin Schectman, Isabel Cepeda, Ryan Kirk, Sean M O'Toole, Sacha B Nelson

eLife. 2023; 12: e74899. Published online 2023 Feb 7. doi: 10.7554/eLife.74899

PMCID:: PMC10010687

Abstract Article PDF–2.0M

Select item 78263352.

Systematic analysis of differential rhythmic liver gene expression mediated by the circadian clock and feeding rhythms

Benjamin D. Weger, Cédric Gobet, Fabrice P. A. David, Florian Atger, Eva Martin, Nicholas E. Phillips, Aline Charpagne, Meltem Weger, Felix Naef, Frédéric Gachon

Proc Natl Acad Sci U S A. 2021 Jan 19; 118(3): e2015803118. Published online 2021 Jan 15. doi: 10.1073/pnas.2015803118

PMCID:: PMC7826335

Abstract Article PDF–5.8M

Select item 77365353.

Neuronal Activity Regulates Blood-Brain Barrier Efflux Transport through Endothelial Circadian Genes

Robert S. Pulido, Roeben N. Munji, Tamara C. Chan, Clare R. Quirk, Geoffrey A. Weiner, Benjamin D. Weger, Meghan J. Rossi, Sara Elmsaouri, Mario Malfavon, Aaron Deng, Caterina P. Profaci, Marie Blanchette, Tongcheng Qian, Koji L. Foreman, Eric V. Shusta, Michael R. Gorman, Frédéric Gachon, Stefan Leutgeb, Richard Daneman

Neuron. Author manuscript; available in PMC 2021 Dec 9.

Published in final edited form as: Neuron. 2020 Dec 9; 108(5): 937–952.e7. Published online 2020 Sep 25. doi: 10.1016/j.neuron.2020.09.002

PMCID:: PMC7736535

Abstract Article PDF–2.4M

Select item 64969334.

Thyrotroph embryonic factor is downregulated in bladder cancer and suppresses proliferation and tumorigenesis via the AKT/FOXOs signalling pathway

Jianan Yang, Bin Wang, Han Chen, Xuhong Chen, Jing Li, Yanfei Chen, Daozhang Yuan, Shunsheng Zheng

Cell Prolif. 2019 Mar; 52(2): e12560. Published online 2018 Dec 4. doi: 10.1111/cpr.12560

PMCID:: PMC6496933

Abstract Article PDF–1.7M

Select item 62333185.

Loss of CLOCK Results in Dysfunction of Brain Circuits Underlying Focal Epilepsy

Peijun Li, Xiaoqin Fu, Nathan A. Smith, Julie Ziobro, Julian Curiel, Milagros J. Tenga, Brandon Martin, Samuel Freedman, Christian A. Cea-Del Rio, Livio Oboti, Tammy N. Tsuchida, Chima Oluigbo, Amanda Yaun, Suresh N. Magge, Brent O’Neill, Amy Kao, Tesfaye G. Zelleke, Dewi T. Depositario-Cabacar, Svetlana Ghimbovschi, Susan Knoblach, Chen-Ying Ho, Joshua G. Corbin, Howard P. Goodkin, Stefano Vicini, Molly M. Huntsman, William D. Gaillard, Gregorio Valdez, Judy S. Liu

Neuron. Author manuscript; available in PMC 2018 Nov 13.

Published in final edited form as: Neuron. 2017 Oct 11; 96(2): 387–401.e6. doi: 10.1016/j.neuron.2017.09.044

PMCID:: PMC6233318

Abstract Article PDF–2.7M

Select item 52909906.

Widespread and dynamic translational control of red blood cell development

Juan R. Alvarez-Dominguez, Xu Zhang, Wenqian Hu

Blood. 2017 Feb 2; 129(5): 619–629. Prepublished online 2016 Nov 29. doi: 10.1182/blood-2016-09-741835

PMCID:: PMC5290990

Abstract Article

Select item 45623917.

Chronic Alcohol Exposure and the Circadian Clock Mutation Exert Tissue-Specific Effects on Gene Expression in Mouse Hippocampus, Liver and Proximal Colon

Keith C. Summa, Peng Jiang, Karrie Fitzpatrick, Robin M. Voigt, Samuel J. Bowers, Christopher B. Forsyth, Martha Hotz Vitaterna, Ali Keshavarzian, Fred W. Turek

Alcohol Clin Exp Res. Author manuscript; available in PMC 2016 Oct 1.

Published in final edited form as: Alcohol Clin Exp Res. 2015 Oct; 39(10): 1917–1929. Published online 2015 Sep 2. doi: 10.1111/acer.12834

PMCID:: PMC4562391

Abstract Article PDF–927K

Select item 43195598.

A high resolution spatiotemporal atlas of gene expression of the developing mouse brain

Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones

Neuron. Author manuscript; available in PMC 2015 Jul 16.

Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033

PMCID:: PMC4319559

Abstract Article PDF–3.0M

Select item 39010709.

Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation

Juan R. Alvarez-Dominguez, Wenqian Hu, Bingbing Yuan, Jiahai Shi, Staphany S. Park, Austin A. Gromatzky, Alexander van Oudenaarden, Harvey F. Lodish

Blood. 2014 Jan 23; 123(4): 570–581. Prepublished online 2013 Nov 7. doi: 10.1182/blood-2013-10-530683

PMCID:: PMC3901070

Abstract Article

Select item 317805910.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 315734411.

Calcium Prevents Tumorigenesis in a Mouse Model of Colorectal Cancer

Ji-Lin Wang, Yan-Wei Lin, Hui-Min Chen, Xuan Kong, Hua Xiong, Nan Shen, Jie Hong, Jing-Yuan Fang

PLoS One. 2011; 6(8): e22566. Published online 2011 Aug 17. doi: 10.1371/journal.pone.0022566

PMCID:: PMC3157344

Abstract Article PDF–930K

Select item 311015112.

A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58

Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara

Dev Cell. Author manuscript; available in PMC 2011 Jun 7.

Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011

PMCID:: PMC3110151

Abstract Article PDF–2.0M

Select item 306432213.

Proline- and acidic amino acid-rich basic leucine zipper proteins modulate peroxisome proliferator-activated receptor α (PPARα) activity

Frédéric Gachon, Nicolas Leuenberger, Thierry Claudel, Pascal Gos, Céline Jouffe, Fabienne Fleury Olela, Xavier de Mollerat du Jeu, Walter Wahli, Ueli Schibler

Proc Natl Acad Sci U S A. 2011 Mar 22; 108(12): 4794–4799. Published online 2011 Mar 7. doi: 10.1073/pnas.1002862108

PMCID:: PMC3064322

Abstract Article PDF–804K

Select item 303797114.

A Novel Pathway of TEF Regulation Mediated by MicroRNA-125b Contributes to the Control of Actin Distribution and Cell Shape in Fibroblasts

Olga Gutierrez, Maria T. Berciano, Miguel Lafarga, Jose L. Fernandez-Luna

PLoS One. 2011; 6(2): e17169. Published online 2011 Feb 11. doi: 10.1371/journal.pone.0017169

PMCID:: PMC3037971

Abstract Article PDF–560K

Select item 283626715.

An atlas of combinatorial transcriptional regulation in mouse and man

The FANTOM consortium and RIKEN Omics Science Center

Cell. Author manuscript; available in PMC 2011 Mar 5.

Published in final edited form as: Cell. 2010 Mar 5; 140(5): 744–752. doi: 10.1016/j.cell.2010.01.044

Correction in:: volume 141 on page 369

PMCID:: PMC2836267

Abstract Article PDF–2.2M

Select item 275260216.

Molecular clock is involved in predictive circadian adjustment of renal function

Annie Mercier Zuber, Gabriel Centeno, Sylvain Pradervand, Svetlana Nikolaeva, Lionel Maquelin, Léonard Cardinaux, Olivier Bonny, Dmitri Firsov

Proc Natl Acad Sci U S A. 2009 Sep 22; 106(38): 16523–16528. Published online 2009 Sep 9. doi: 10.1073/pnas.0904890106

PMCID:: PMC2752602

Abstract Article PDF–385K

Select item 272695017.

REV-ERBα Participates in Circadian SREBP Signaling and Bile Acid Homeostasis

Gwendal Le Martelot, Thierry Claudel, David Gatfield, Olivier Schaad, Benoît Kornmann, Giuseppe Lo Sasso, Antonio Moschetta, Ueli Schibler

PLoS Biol. 2009 Sep; 7(9): e1000181. Published online 2009 Sep 1. doi: 10.1371/journal.pbio.1000181

PMCID:: PMC2726950

Abstract Article PDF–565K

Select item 52892818.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 44995019.

The two PAR leucine zipper proteins, TEF and DBP, display similar circadian and tissue-specific expression, but have different target promoter preferences.

P Fonjallaz, V Ossipow, G Wanner, U Schibler

EMBO J. 1996 Jan 15; 15(2): 351–362.

PMCID:: PMC449950

Summary Page Browse PDF–2.8M

Select item 42319120.

The loss of circadian PAR bZip transcription factors results in epilepsy

Frédéric Gachon, Philippe Fonjallaz, Francesca Damiola, Pascal Gos, Tohru Kodama, Jozsef Zakany, Denis Duboule, Brice Petit, Mehdi Tafti, Ueli Schibler

Genes Dev. 2004 Jun 15; 18(12): 1397–1412. doi: 10.1101/gad.301404

PMCID:: PMC423191

Abstract Article PDF–454K

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