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Items: 1 to 20 of 26

1.
Genetic determinants of micronucleus formation in vivo
D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus
Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0
PMCID:
PMC10917660
AbstractArticlePDF–4.8M
2.
TUT4/7-mediated uridylation of a coronavirus subgenomic RNAs delays viral replication
Ankit Gupta, Yin Li, Shih-Heng Chen, Brian N. Papas, Negin P. Martin, Marcos Morgan
Commun Biol. 2023; 6: 438. Published online 2023 Apr 21. doi: 10.1038/s42003-023-04814-1
PMCID:
PMC10119532
AbstractArticlePDF–1.8M
3.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
4.
BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING)
Kou Motani, Hidetaka Kosako
J Biol Chem. 2020 Aug 7; 295(32): 11174–11183. Published online 2020 Jun 17. doi: 10.1074/jbc.RA120.014323
PMCID:
PMC7415991
AbstractArticlePDF–2.0M
5.
Characterization of zygotic genome activation-dependent maternal mRNA clearance in mouse
Qian-Qian Sha, Ye-Zhang Zhu, Sen Li, Yu Jiang, Lu Chen, Xiao-Hong Sun, Li Shen, Xiang-Hong Ou, Heng-Yu Fan
Nucleic Acids Res. 2020 Jan 24; 48(2): 879–894. Published online 2019 Nov 28. doi: 10.1093/nar/gkz1111
PMCID:
PMC6954448
AbstractArticlePDF–5.5M
6.
New roles for the de-ubiquitylating enzyme OTUD4 in an RNA–protein network and RNA granules
Richa Das, Lukas Schwintzer, Stanislav Vinopal, Eva Aguado Roca, Marc Sylvester, Ana-Maria Oprisoreanu, Susanne Schoch, Frank Bradke, Meike Broemer
J Cell Sci. 2019 Jun 15; 132(12): jcs229252. Published online 2019 Jun 17. doi: 10.1242/jcs.229252
PMCID:
PMC6602300
AbstractArticle
7.
A programmed wave of uridylation-primed mRNA degradation is essential for meiotic progression and mammalian spermatogenesis
Marcos Morgan, Yuka Kabayama, Christian Much, Ivayla Ivanova, Monica Di Giacomo, Tatsiana Auchynnikava, Jack Michael Monahan, Dimitrios Michael Vitsios, Lina Vasiliauskaitė, Stefano Comazzetto, Juri Rappsilber, Robin Campbell Allshire, Bo Torben Porse, Anton James Enright, Dónal O’Carroll
Cell Res. 2019 Mar; 29(3): 221–232. Published online 2019 Jan 7. doi: 10.1038/s41422-018-0128-1
PMCID:
PMC6420129
AbstractArticlePDF–2.9M
8.
mRNA 3' uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome
Marcos Morgan, Christian Much, Monica DiGiacomo, Chiara Azzi, Ivayla Ivanova, Dimitrios M. Vitsios, Jelena Pistolic, Paul Collier, Pedro Moreira, Vladimir Benes, Anton J. Enright, Dónal O’Carroll
Nature. Author manuscript; available in PMC 2018 Feb 9.
Published in final edited form as: Nature. 2017 Aug 17; 548(7667): 347–351. Published online 2017 Aug 9. doi: 10.1038/nature23318
PMCID:
PMC5768236
AbstractArticlePDF–5.8M
9.
Multi-domain utilization by TUT4 and TUT7 in control of let-7 biogenesis
Christopher R. Faehnle, Jack Walleshauser, Leemor Joshua-Tor
Nat Struct Mol Biol. Author manuscript; available in PMC 2018 Jan 3.
Published in final edited form as: Nat Struct Mol Biol. 2017 Aug; 24(8): 658–665. Published online 2017 Jul 3. doi: 10.1038/nsmb.3428
PMCID:
PMC5542866
AbstractArticlePDF–1.0M
10.
The RNA uridyltransferase Zcchc6 is expressed in macrophages and impacts innate immune responses
Elyse Kozlowski, Gregory A. Wasserman, Marcos Morgan, Dónal O’Carroll, Nora-Guadalupe P. Ramirez, Suryaram Gummuluru, Jasmine Y. Rah, Adam C. Gower, Michael Ieong, Lee J. Quinton, Joseph P. Mizgerd, Matthew R. Jones
PLoS One. 2017; 12(6): e0179797. Published online 2017 Jun 30. doi: 10.1371/journal.pone.0179797
PMCID:
PMC5493306
AbstractArticlePDF–11M
11.
Transgenically-expressed secretoglobin 3A2 accelerates resolution of bleomycin-induced pulmonary fibrosis in mice
Yan Cai, Mitsuhiro Yoneda, Takeshi Tomita, Reiko Kurotani, Minoru Okamoto, Taketomo Kido, Hiroyuki Abe, Wayne Mitzner, Arjun Guha, Shioko Kimura
BMC Pulm Med. 2015; 15: 72. Published online 2015 Jul 16. doi: 10.1186/s12890-015-0065-4
PMCID:
PMC4504078
AbstractArticlePDF–2.0M
12.
The Vertebrate Genome Annotation browser 10 years on
Jennifer L. Harrow, Charles A. Steward, Adam Frankish, James G. Gilbert, Jose M. Gonzalez, Jane E. Loveland, Jonathan Mudge, Dan Sheppard, Mark Thomas, Stephen Trevanion, Laurens G. Wilming
Nucleic Acids Res. 2014 Jan 1; 42(Database issue): D771–D779. Published online 2013 Dec 6. doi: 10.1093/nar/gkt1241
PMCID:
PMC3964964
AbstractArticlePDF–11M
13.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
14.
Zcchc11 Uridylates Mature miRNAs to Enhance Neonatal IGF-1 Expression, Growth, and Survival
Matthew R. Jones, Matthew T. Blahna, Elyse Kozlowski, Kori Y. Matsuura, Joseph D. Ferrari, Samantha A. Morris, John T. Powers, George Q. Daley, Lee J. Quinton, Joseph P. Mizgerd
PLoS Genet. 2012 Nov; 8(11): e1003105. Published online 2012 Nov 29. doi: 10.1371/journal.pgen.1003105
PMCID:
PMC3510031
AbstractArticlePDF–1.2M
15.
Oct4 links multiple epigenetic pathways to the pluripotency network
Junjun Ding, Huilei Xu, Francesco Faiola, Avi Ma'ayan, Jianlong Wang
Cell Res. 2012 Jan; 22(1): 155–167. Published online 2011 Nov 15. doi: 10.1038/cr.2011.179
PMCID:
PMC3252465
AbstractArticlePDF–2.7M
16.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
17.
Zcchc11-dependent uridylation of microRNA directs cytokine expression
Matthew R. Jones, Lee J. Quinton, Matthew T. Blahna, Joel R. Neilson, Suneng Fu, Alexander R. Ivanov, Dieter A. Wolf, Joseph P. Mizgerd
Nat Cell Biol. Author manuscript; available in PMC 2010 Mar 1.
Published in final edited form as: Nat Cell Biol. 2009 Sep; 11(9): 1157–1163. Published online 2009 Aug 23. doi: 10.1038/ncb1931
PMCID:
PMC2759306
ArticlePDF–1.0M
18.
Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in embryonic stem cells
John P. Hagan, Elena Piskounova, Richard I. Gregory
Nat Struct Mol Biol. Author manuscript; available in PMC 2010 Apr 1.
Published in final edited form as: Nat Struct Mol Biol. 2009 Oct; 16(10): 1021–1025. Published online 2009 Aug 27. doi: 10.1038/nsmb.1676
PMCID:
PMC2758923
AbstractArticlePDF–646K
19.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
20.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M

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