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Items: 1 to 20 of 23

1.
The Caspase-Activated DNase drives inflammation and contributes to defense against viral infection
Abdul Moeed, Nico Thilmany, Frederic Beck, Bhagya K. Puthussery, Noemi Ortmann, Aladin Haimovici, M. Tarek Badr, Elham Bavafaye Haghighi, Melanie Boerries, Rupert Öllinger, Roland Rad, Susanne Kirschnek, Ian E. Gentle, Sainitin Donakonda, Philipp P. Petric, Jonas F. Hummel, Elisabeth Pfaffendorf, Paola Zanetta, Christoph Schell, Martin Schwemmle, Arnim Weber, Georg Häcker
Cell Death Differ. 2024 Jul; 31(7): 924–937. Published online 2024 Jun 7. doi: 10.1038/s41418-024-01320-7
PMCID:
PMC11239672
AbstractArticlePDF–4.2M
2.
Genetic determinants of micronucleus formation in vivo
D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus
Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0
PMCID:
PMC10917660
AbstractArticlePDF–4.8M
3.
The Biology of Cell-free DNA Fragmentation and the Roles of DNASE1, DNASE1L3, and DFFB
Diana S.C. Han, Meng Ni, Rebecca W.Y. Chan, Vicken W.H. Chan, Kathy O. Lui, Rossa W.K. Chiu, Y.M. Dennis Lo
Am J Hum Genet. 2020 Feb 6; 106(2): 202–214. Published online 2020 Jan 30. doi: 10.1016/j.ajhg.2020.01.008
PMCID:
PMC7010979
AbstractArticlePDF–4.0M
4.
Loss of Caspase‐Activated DNase Protects Against Atherosclerosis in Apolipoprotein E–Deficient Mice
Meng‐Lin Chao, Junhong Guo, Wen‐Lin Cheng, Xue‐Yong Zhu, Zhi‐Gang She, Zan Huang, Yong Ji, Hongliang Li
J Am Heart Assoc. 2016 Dec; 5(12): e004362. Published online 2016 Dec 22. doi: 10.1161/JAHA.116.004362
PMCID:
PMC5210397
AbstractArticlePDF–4.8M
5.
DNase γ Is the Effector Endonuclease for Internucleosomal DNA Fragmentation in Necrosis
Ryushin Mizuta, Shinsuke Araki, Makoto Furukawa, Yuki Furukawa, Syota Ebara, Daisuke Shiokawa, Katsuhiko Hayashi, Sei-ichi Tanuma, Daisuke Kitamura
PLoS One. 2013; 8(12): e80223. Published online 2013 Dec 2. doi: 10.1371/journal.pone.0080223
PMCID:
PMC3846476
AbstractArticlePDF–4.5M
6.
A direct physical interaction between Nanog and Sox2 regulates embryonic stem cell self-renewal
Alessia Gagliardi, Nicholas P Mullin, Zi Ying Tan, Douglas Colby, Anastasia I Kousa, Florian Halbritter, Jason T Weiss, Anastasia Felker, Karel Bezstarosti, Rebecca Favaro, Jeroen Demmers, Silvia K Nicolis, Simon R Tomlinson, Raymond A Poot, Ian Chambers
EMBO J. 2013 Aug 14; 32(16): 2231–2247. Published online 2013 Jul 26. doi: 10.1038/emboj.2013.161
PMCID:
PMC3746198
AbstractArticlePDF–2.9M
7.
Chromatin Collapse during Caspase-dependent Apoptotic Cell Death Requires DNA Fragmentation Factor, 40-kDa Subunit-/Caspase-activated Deoxyribonuclease-mediated 3′-OH Single-strand DNA Breaks
Victoria Iglesias-Guimarais, Estel Gil-Guiñon, María Sánchez-Osuna, Elisenda Casanelles, Mercè García-Belinchón, Joan X. Comella, Victor J. Yuste
J Biol Chem. 2013 Mar 29; 288(13): 9200–9215. Published online 2013 Feb 21. doi: 10.1074/jbc.M112.411371
PMCID:
PMC3610992
AbstractArticlePDF–3.5M
8.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
9.
Apoptotic cells suppress mast cell inflammatory responses via the CD300a immunoreceptor
Chigusa Nakahashi-Oda, Satoko Tahara-Hanaoka, Masamichi Shoji, Yasushi Okoshi, Takako Nakano-Yokomizo, Nobuhiro Ohkohchi, Teruhito Yasui, Hitoshi Kikutani, Shin-ichiro Honda, Kazuko Shibuya, Shigekazu Nagata, Akira Shibuya
J Exp Med. 2012 Jul 30; 209(8): 1493–1503. doi: 10.1084/jem.20120096
PMCID:
PMC3409498
AbstractArticlePDF–1.9M
10.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
11.
Caspase 3/caspase-activated DNase promote cell differentiation by inducing DNA strand breaks
Brian D. Larsen, Shravanti Rampalli, Leanne E. Burns, Steve Brunette, F. Jeffrey Dilworth, Lynn A. Megeney
Proc Natl Acad Sci U S A. 2010 Mar 2; 107(9): 4230–4235. Published online 2010 Feb 16. doi: 10.1073/pnas.0913089107
PMCID:
PMC2840077
AbstractArticlePDF–1.0M
12.
Inhibition of Autophagy Prevents Hippocampal Pyramidal Neuron Death after Hypoxic-Ischemic Injury
Masato Koike, Masahiro Shibata, Masao Tadakoshi, Kunihito Gotoh, Masaaki Komatsu, Satoshi Waguri, Nobutaka Kawahara, Keisuke Kuida, Shigekazu Nagata, Eiki Kominami, Keiji Tanaka, Yasuo Uchiyama
Am J Pathol. 2008 Feb; 172(2): 454–469. doi: 10.2353/ajpath.2008.070876
PMCID:
PMC2312361
AbstractArticlePDF–9.0M
13.
Toll-like receptor–independent gene induction program activated by mammalian DNA escaped from apoptotic DNA degradation
Yasutaka Okabe, Kohki Kawane, Shizuo Akira, Tadatsugu Taniguchi, Shigekazu Nagata
J Exp Med. 2005 Nov 21; 202(10): 1333–1339. doi: 10.1084/jem.20051654
PMCID:
PMC2212973
AbstractArticlePDF–754K
14.
Identification of a novel antiapoptotic protein that antagonizes ASK1 and CAD activities
Ssang-Goo Cho, Jin Woo Kim, Yong Hee Lee, Hyun Sub Hwang, Mi-Sung Kim, Kanghyun Ryoo, Myung Jin Kim, Kyung Tae Noh, Eun Kyung Kim, Jun-Ho Cho, Kyoung Wan Yoon, Eun-Gyung Cho, Hee-Sae Park, Sung Wook Chi, Min-Jae Lee, Sang Sun Kang, Hidenori Ichijo, Eui-Ju Choi
J Cell Biol. 2003 Oct 13; 163(1): 71–81. doi: 10.1083/jcb.200303003
PMCID:
PMC2173438
AbstractArticlePDF–850K
15.
Engineered apoptotic nucleases for chromatin research
Fei Xiao, Piotr Widlak, William T. Garrard
Nucleic Acids Res. 2007 Jul; 35(13): e93. Published online 2007 Jul 10. doi: 10.1093/nar/gkm486
PMCID:
PMC1935020
AbstractArticlePDF–3.6M
16.
A unique role of the DNA fragmentation factor in maintaining genomic stability
Bin Yan, Huili Wang, Yuanlin Peng, Ye Hu, He Wang, Xiuwu Zhang, Qi Chen, Joel S. Bedford, Mark W. Dewhirst, Chuan-Yuan Li
Proc Natl Acad Sci U S A. 2006 Jan 31; 103(5): 1504–1509. Published online 2006 Jan 23. doi: 10.1073/pnas.0507779103
PMCID:
PMC1360538
AbstractArticlePDF–426K
17.
Impaired involution of mammary glands in the absence of milk fat globule EGF factor 8
Rikinari Hanayama, Shigekazu Nagata
Proc Natl Acad Sci U S A. 2005 Nov 15; 102(46): 16886–16891. Published online 2005 Nov 7. doi: 10.1073/pnas.0508599102
PMCID:
PMC1277971
AbstractArticlePDF–858K
18.
Comparative Analysis of Apoptosis and Inflammation Genes of Mice and Humans
John C. Reed, Kutbuddin Doctor, Ana Rojas, Juan M. Zapata, Christian Stehlik, Loredana Fiorentino, Jason Damiano, Wilfried Roth, Shu-ichi Matsuzawa, Ruchi Newman, Shinichi Takayama, Hiroyuki Marusawa, Famming Xu, Guy Salvesen, RIKEN GER Group, GSL Members, Adam Godzik
Genome Res. 2003 Jun; 13(6b): 1376–1388. doi: 10.1101/gr.1053803
PMCID:
PMC403667
AbstractArticlePDF–157K
19.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
20.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M

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