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Items: 1 to 20 of 31

1.
Stress‐sensitive dynamics of miRNAs and Elba1 in Drosophila embryogenesis
Lovisa Örkenby, Signe Skog, Helen Ekman, Alessandro Gozzo, Unn Kugelberg, Rashmi Ramesh, Srivathsa Magadi, Gianluca Zambanini, Anna Nordin, Claudio Cantú, Daniel Nätt, Anita Öst
Mol Syst Biol. 2023 May; 19(5): e11148. Published online 2023 Mar 20. doi: 10.15252/msb.202211148
PMCID:
PMC10167479
AbstractArticlePDF–3.0M
2.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
3.
A large-scale resource for tissue-specific CRISPR mutagenesis in Drosophila
Fillip Port, Claudia Strein, Mona Stricker, Benedikt Rauscher, Florian Heigwer, Jun Zhou, Celine Beyersdörffer, Jana Frei, Amy Hess, Katharina Kern, Laura Lange, Nora Langner, Roberta Malamud, Bojana Pavlović, Kristin Rädecke, Lukas Schmitt, Lukas Voos, Erica Valentini, Michael Boutros
eLife. 2020; 9: e53865. Published online 2020 Feb 13. doi: 10.7554/eLife.53865
PMCID:
PMC7062466
AbstractArticlePDF–3.4M
4.
A Comprehensive Drosophila melanogaster Transcription Factor Interactome
Leila Shokri, Sachi Inukai, Antonina Hafner, Kathryn Weinand, Korneel Hens, Anastasia Vedenko, Stephen S. Gisselbrecht, Riccardo Dainese, Johannes Bischof, Edy Furger, Jean-Daniel Feuz, Konrad Basler, Bart Deplancke, Martha L. Bulyk
Cell Rep. Author manuscript; available in PMC 2019 Apr 26.
Published in final edited form as: Cell Rep. 2019 Apr 16; 27(3): 955–970.e7. doi: 10.1016/j.celrep.2019.03.071
PMCID:
PMC6485956
AbstractArticlePDF–1.6M
5.
Generation of a versatile BiFC ORFeome library for analyzing protein–protein interactions in live Drosophila
Johannes Bischof, Marilyne Duffraisse, Edy Furger, Leiore Ajuria, Guillaume Giraud, Solene Vanderperre, Rachel Paul, Mikael Björklund, Damien Ahr, Alexis W Ahmed, Lionel Spinelli, Christine Brun, Konrad Basler, Samir Merabet
eLife. 2018; 7: e38853. Published online 2018 Sep 24. doi: 10.7554/eLife.38853
PMCID:
PMC6177257
AbstractArticlePDF–4.9M
6.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
7.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
8.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
9.
Transcription Factor Networks in Drosophila melanogaster
David Y. Rhee, Dong-Yeon Cho, Bo Zhai, Matthew Slattery, Lijia Ma, Julian Mintseris, Christina Y. Wong, Kevin P. White, Susan E. Celniker, Teresa M. Przytycka, Steven P. Gygi, Robert A. Obar, Spyros Artavanis-Tsakonas
Cell Rep. Author manuscript; available in PMC 2015 Apr 20.
Published in final edited form as: Cell Rep. 2014 Sep 25; 8(6): 2031–2043. Published online 2014 Sep 18. doi: 10.1016/j.celrep.2014.08.038
PMCID:
PMC4403667
AbstractArticlePDF–1.3M
10.
A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development
Claus Schertel, Monica Albarca, Claudia Rockel-Bauer, Nicholas W. Kelley, Johannes Bischof, Korneel Hens, Erik van Nimwegen, Konrad Basler, Bart Deplancke
Genome Res. 2015 Apr; 25(4): 514–523. doi: 10.1101/gr.181305.114
PMCID:
PMC4381523
AbstractArticlePDF–700K
11.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
12.
P-TEFb, the Super Elongation Complex and Mediator Regulate a Subset of Non-paused Genes during Early Drosophila Embryo Development
Olle Dahlberg, Olga Shilkova, Min Tang, Per-Henrik Holmqvist, Mattias Mannervik
PLoS Genet. 2015 Feb; 11(2): e1004971. Published online 2015 Feb 13. doi: 10.1371/journal.pgen.1004971
Correction in:
PLoS Genet. 2015 Jun; 11(6): e1005319.
PMCID:
PMC4334199
AbstractArticlePDF–1.4M
13.
Ultrasensitive proteome analysis using paramagnetic bead technology
Christopher S Hughes, Sophia Foehr, David A Garfield, Eileen E Furlong, Lars M Steinmetz, Jeroen Krijgsveld
Mol Syst Biol. 2014 Oct 1; 10(10): 1–10. Published online 2014 Oct 30. doi: 10.15252/msb.20145625
PMCID:
PMC4299378
AbstractArticlePDF–1.7M
14.
Sex- and Tissue-specific Functions of Drosophila Doublesex Transcription Factor Target Genes
Emily Clough, Erin Jimenez, Yoo-Ah Kim, Cale Whitworth, Megan C. Neville, Leonie Hempel, Hania J. Pavlou, Zhen-Xia Chen, David Sturgill, Ryan Dale, Harold E. Smith, Teresa M. Przytycka, Stephen F. Goodwin, Mark Van Doren, Brian Oliver
Dev Cell. Author manuscript; available in PMC 2015 Dec 22.
Published in final edited form as: Dev Cell. 2014 Dec 22; 31(6): 761–773. doi: 10.1016/j.devcel.2014.11.021
PMCID:
PMC4275658
AbstractArticlePDF–1.6M
15.
The Intrinsically Disordered Regions of the Drosophila melanogaster Hox Protein Ultrabithorax Select Interacting Proteins Based on Partner Topology
Hao-Ching Hsiao, Kim L. Gonzalez, Daniel J. Catanese, Jr., Kristopher E. Jordy, Kathleen S. Matthews, Sarah E. Bondos
PLoS One. 2014; 9(10): e108217. Published online 2014 Oct 6. doi: 10.1371/journal.pone.0108217
PMCID:
PMC4186791
AbstractArticlePDF–1.1M
16.
Functional Analysis of the Drosophila Embryonic Germ Cell Transcriptome by RNA Interference
Ferenc Jankovics, László Henn, Ágnes Bujna, Péter Vilmos, Kerstin Spirohn, Michael Boutros, Miklós Erdélyi
PLoS One. 2014; 9(6): e98579. Published online 2014 Jun 4. doi: 10.1371/journal.pone.0098579
PMCID:
PMC4045815
AbstractArticlePDF–10M
17.
A global change in RNA polymerase II pausing during the Drosophila midblastula transition
Kai Chen, Jeff Johnston, Wanqing Shao, Samuel Meier, Cynthia Staber, Julia Zeitlinger
eLife. 2013; 2: e00861. Published online 2013 Aug 13. doi: 10.7554/eLife.00861
PMCID:
PMC3743134
AbstractArticlePDF–4.1M
18.
Extensive polymerase pausing during Drosophila axis patterning enables high-level and pliable transcription
Abbie Saunders, Leighton J. Core, Catherine Sutcliffe, John T. Lis, Hilary L. Ashe
Genes Dev. 2013 May 15; 27(10): 1146–1158. doi: 10.1101/gad.215459.113
PMCID:
PMC3672648
AbstractArticlePDF–2.1M
19.
DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila
William W. Fisher, Jingyi Jessica Li, Ann S. Hammonds, James B. Brown, Barret D. Pfeiffer, Richard Weiszmann, Stewart MacArthur, Sean Thomas, John A. Stamatoyannopoulos, Michael B. Eisen, Peter J. Bickel, Mark D. Biggin, Susan E. Celniker
Proc Natl Acad Sci U S A. 2012 Dec 26; 109(52): 21330–21335. Published online 2012 Dec 10. doi: 10.1073/pnas.1209589110
PMCID:
PMC3535648
AbstractArticlePDF–344K
20.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M

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