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Select item 104527911.

Structural and Comparative Analyses of Insects Suggest the Presence of an Ultra-Conserved Regulatory Element of the Genes Encoding Vacuolar-Type ATPase Subunits and Assembly Factors

Domenica Lovero, Damiano Porcelli, Luca Giordano, Claudio Lo Giudice, Ernesto Picardi, Graziano Pesole, Eugenia Pignataro, Antonio Palazzo, René Massimiliano Marsano

Biology (Basel) 2023 Aug; 12(8): 1127. Published online 2023 Aug 13. doi: 10.3390/biology12081127

PMCID:: PMC10452791

Abstract Article PDF–10M

Select item 87282082.

FlyAtlas 2 in 2022: enhancements to the Drosophila melanogaster expression atlas

Sue A Krause, Gayle Overend, Julian A T Dow, David P Leader

Nucleic Acids Res. 2022 Jan 7; 50(D1): D1010–D1015. Published online 2021 Oct 29. doi: 10.1093/nar/gkab971

PMCID:: PMC8728208

Abstract Article PDF–2.8M

Select item 87266783.

V-ATPase controls tumor growth and autophagy in a Drosophila model of gliomagenesis

Miriam Formica, Alessandra Maria Storaci, Irene Bertolini, Francesca Carminati, Helene Knævelsrud, Valentina Vaira, Thomas Vaccari

Autophagy. 2021; 17(12): 4442–4452. Published online 2021 May 12. doi: 10.1080/15548627.2021.1918915

PMCID:: PMC8726678

Abstract Article PDF–3.6M

Select item 69615784.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 69450675.

Acetyltransferase GCN5 regulates autophagy and lysosome biogenesis by targeting TFEB

Yusha Wang, Yewei Huang, Jiaqi Liu, Jinna Zhang, Mingming Xu, Zhiyuan You, Chao Peng, Zhefeng Gong, Wei Liu

EMBO Rep. 2020 Jan 7; 21(1): e48335. Published online 2019 Nov 21. doi: 10.15252/embr.201948335

PMCID:: PMC6945067

Abstract Article PDF–3.1M

Select item 59368306.

Histone deacetylase–mediated regulation of endolysosomal pH

Hari Prasad, Rajini Rao

J Biol Chem. 2018 May 4; 293(18): 6721–6735. Published online 2018 Mar 22. doi: 10.1074/jbc.RA118.002025

PMCID:: PMC5936830

Abstract Article PDF–3.1M

Select item 57078057.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890028.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 48359589.

Drosophila Mitf regulates the V-ATPase and the lysosomal-autophagic pathway

Valentina Bouché, Alma Perez Espinosa, Luigi Leone, Marco Sardiello, Andrea Ballabio, Juan Botas

Autophagy. 2016 Mar; 12(3): 484–498. Published online 2016 Jan 13. doi: 10.1080/15548627.2015.1134081

PMCID:: PMC4835958

Abstract Article PDF–2.2M

Select item 473800510.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

Select item 454095311.

Mitf is a master regulator of the v-ATPase, forming a control module for cellular homeostasis with v-ATPase and TORC1

Tianyi Zhang, Qingxiang Zhou, Margret Helga Ogmundsdottir, Katrin Möller, Robert Siddaway, Lionel Larue, Michael Hsing, Sek Won Kong, Colin Ronald Goding, Arnar Palsson, Eirikur Steingrimsson, Francesca Pignoni

J Cell Sci. 2015 Aug 1; 128(15): 2938–2950. doi: 10.1242/jcs.173807

PMCID:: PMC4540953

Abstract Article

Select item 452833012.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832913.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 442868814.

Autophagosome–lysosome fusion is independent of V-ATPase-mediated acidification

Caroline Mauvezin, Péter Nagy, Gábor Juhász, Thomas P. Neufeld

Nat Commun. 2015 May 11; 6: 7007. Published online 2015 May 11. doi: 10.1038/ncomms8007

PMCID:: PMC4428688

Abstract Article PDF–7.5M

Select item 435288715.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 407405316.

Population Distribution Analyses Reveal a Hierarchy of Molecular Players Underlying Parallel Endocytic Pathways

Gagan D. Gupta, Gautam Dey, Swetha MG, Balaji Ramalingam, Khader Shameer, Joseph Jose Thottacherry, Joseph Mathew Kalappurakkal, Mark T. Howes, Ruma Chandran, Anupam Das, Sindhu Menon, Robert G. Parton, R. Sowdhamini, Mukund Thattai, Satyajit Mayor

PLoS One. 2014; 9(6): e100554. Published online 2014 Jun 27. doi: 10.1371/journal.pone.0100554

Correction in:: PLoS One. 2018; 13(9): e0204770.

PMCID:: PMC4074053

Abstract Article PDF–2.6M

Select item 373411117.

Data-mining the FlyAtlas online resource to identify core functional motifs across transporting epithelia

Venkateswara R Chintapalli, Jing Wang, Pawel Herzyk, Shireen A Davies, Julian AT Dow

BMC Genomics. 2013; 14: 518. Published online 2013 Jul 30. doi: 10.1186/1471-2164-14-518

PMCID:: PMC3734111

Abstract Article PDF–1.5M

Select item 353067718.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

Select item 346946719.

The Many Landscapes of Recombination in Drosophila melanogaster

Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin

PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905

PMCID:: PMC3469467

Abstract Article PDF–1.6M

Select item 346266220.

Discovery of Insect and Human Dengue Virus Host Factors

October M. Sessions, Nicholas J. Barrows, Jayme A. Souza-Neto, Timothy J. Robinson, Christine L. Hershey, Mary A. Rodgers, Jose L. Ramirez, George Dimopoulos, Priscilla L. Yang, James L. Pearson, Mariano A. Garcia-Blanco

Nature. Author manuscript; available in PMC 2012 Oct 2.

Published in final edited form as: Nature. 2009 Apr 23; 458(7241): 1047–1050. doi: 10.1038/nature07967

PMCID:: PMC3462662

Abstract Article PDF–448K

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