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Select item 104827501.

Assessment of the roles of Spt5-nucleic acid contacts in promoter proximal pausing of RNA polymerase II

Roberta Dollinger, Eilene B. Deng, Josie Schultz, Sharon Wu, Haley R. Deorio, David S. Gilmour

J Biol Chem. 2023 Sep; 299(9): 105106. Published online 2023 Jul 28. doi: 10.1016/j.jbc.2023.105106

PMCID:: PMC10482750

Abstract Article PDF–3.9M

Select item 87693642.

Differential gene expression analysis identified determinants of cell fate plasticity during radiation-induced regeneration in Drosophila

Michelle Ledru, Caitlin A. Clark, Jeremy Brown, Shilpi Verghese, Sarah Ferrara, Andrew Goodspeed, Tin Tin Su

PLoS Genet. 2022 Jan; 18(1): e1009989. Published online 2022 Jan 6. doi: 10.1371/journal.pgen.1009989

PMCID:: PMC8769364

Abstract Article PDF–3.3M

Select item 86644863.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 83870264.

Extremely rapid and reversible optogenetic perturbation of nuclear proteins in living embryos

Anna C. Kögler, Yacine Kherdjemil, Katharina Bender, Adam Rabinowitz, Raquel Marco-Ferreres, Eileen E.M. Furlong

Dev Cell. 2021 Aug 23; 56(16): 2348–2363.e8. doi: 10.1016/j.devcel.2021.07.011

PMCID:: PMC8387026

Abstract Article

Select item 83525925.

In vivo analysis reveals that ATP-hydrolysis couples remodeling to SWI/SNF release from chromatin

Ben C Tilly, Gillian E Chalkley, Jan A van der Knaap, Yuri M Moshkin, Tsung Wai Kan, Dick HW Dekkers, Jeroen AA Demmers, C Peter Verrijzer

eLife. 2021; 10: e69424. Published online 2021 Jul 27. doi: 10.7554/eLife.69424

PMCID:: PMC8352592

Abstract Article PDF–10M

Select item 78851206.

Wolbachia and Virus Alter the Host Transcriptome at the Interface of Nucleotide Metabolism Pathways

Amelia R. I. Lindsey, Tamanash Bhattacharya, Richard W. Hardy, Irene L. G. Newton

mBio. 2021 Jan-Feb; 12(1): e03472-20. Published online 2021 Feb 9. doi: 10.1128/mBio.03472-20

PMCID:: PMC7885120

Abstract Article PDF–3.5M

Select item 77580517.

Autocrine insulin pathway signaling regulates actin dynamics in cell wound repair

Mitsutoshi Nakamura, Jeffrey M. Verboon, Tessa E. Allen, Maria Teresa Abreu-Blanco, Raymond Liu, Andrew N. M. Dominguez, Jeffrey J. Delrow, Susan M. Parkhurst

PLoS Genet. 2020 Dec; 16(12): e1009186. Published online 2020 Dec 11. doi: 10.1371/journal.pgen.1009186

PMCID:: PMC7758051

Abstract Article PDF–9.7M

Select item 77042588.

In silico identification of Drosophila melanogaster genes encoding RNA polymerase subunits

Steven J Marygold, Nazif Alic, David S Gilmour, Savraj S Grewal

MicroPubl Biol. 2020; 2020: 10.17912/micropub.biology.000320. Published online 2020 Oct 20. doi: 10.17912/micropub.biology.000320

PMCID:: PMC7704258

Article PDF–416K

Select item 76724719.

Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein–DNA complexes

Naomi Yamada, Matthew J Rossi, Nina Farrell, B Franklin Pugh, Shaun Mahony

Nucleic Acids Res. 2020 Nov 18; 48(20): 11215–11226. Published online 2020 Aug 4. doi: 10.1093/nar/gkaa618

PMCID:: PMC7672471

Abstract Article PDF–4.0M

Select item 748010710.

The kinesin-like protein Pavarotti functions noncanonically to regulate actin dynamics

Mitsutoshi Nakamura, Jeffrey M. Verboon, Clara L. Prentiss, Susan M. Parkhurst

J Cell Biol. 2020 Sep 7; 219(9): e201912117. Published online 2020 Jul 13. doi: 10.1083/jcb.201912117

PMCID:: PMC7480107

Abstract Article PDF–7.9M

Select item 724426111.

Chromatin-based reprogramming of a courtship regulator by concurrent pheromone perception and hormone signaling

Songhui Zhao, Bryson Deanhardt, George Thomas Barlow, Paulina Guerra Schleske, Anthony M. Rossi, Pelin C. Volkan

Sci Adv. 2020 May; 6(21): eaba6913. Published online 2020 May 22. doi: 10.1126/sciadv.aba6913

PMCID:: PMC7244261

Abstract Article PDF–647K

Select item 696157812.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 613803413.

Identifying a Transcription Factor Interaction Site on RNA Polymerase II

Andrea M. Skantar, Arno L. Greenleaf

Gene Expr. 1995; 5(1): 49–69. Published online 2018 Sep 14.

PMCID:: PMC6138034

Abstract Article PDF–4.1M

Select item 598915714.

An RNAi-mediated screen identifies novel targets for next-generation antiepileptic drugs based on increased expression of the homeostatic regulator pumilio

Wei-Hsiang Lin, Miaomiao He, Yuen Ngan Fan, Richard A. Baines

J Neurogenet. 2018; 32(2): 106–117. Published online 2018 May 2. doi: 10.1080/01677063.2018.1465570

PMCID:: PMC5989157

Abstract Article PDF–1.5M

Select item 596384315.

Wash exhibits context-dependent phenotypes and, along with the WASH regulatory complex, regulates Drosophila oogenesis

Jeffrey M. Verboon, Jacob R. Decker, Mitsutoshi Nakamura, Susan M. Parkhurst

J Cell Sci. 2018 Apr 15; 131(8): jcs211573. Published online 2018 Apr 13. doi: 10.1242/jcs.211573

Correction in:: J Cell Sci. 2018 May 1; 131(9): jcs219212.

PMCID:: PMC5963843

Abstract Article

Select item 570780516.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900217.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 531200418.

Seizure control through genetic and pharmacological manipulation of Pumilio in Drosophila: a key component of neuronal homeostasis

Wei-Hsiang Lin, Carlo N. G. Giachello, Richard A. Baines

Dis Model Mech. 2017 Feb 1; 10(2): 141–150. doi: 10.1242/dmm.027045

PMCID:: PMC5312004

Abstract Article

Select item 502578219.

Proteome-wide association studies identify biochemical modules associated with a wing-size phenotype in Drosophila melanogaster

Hirokazu Okada, H. Alexander Ebhardt, Sibylle Chantal Vonesch, Ruedi Aebersold, Ernst Hafen

Nat Commun. 2016; 7: 12649. Published online 2016 Sep 1. doi: 10.1038/ncomms12649

PMCID:: PMC5025782

Abstract Article PDF–2.2M

Select item 473800520.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

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