PMC Links for GEO Profiles (Select 21479163) - PMC

Tim Pollex, Adam Rabinowitz, Maria Cristina Gambetta, Raquel Marco-Ferreres, Rebecca R. Viales, Aleksander Jankowski, Christoph Schaub, Eileen E. M. Furlong

Nat Genet. 2024; 56(4): 686–696. Published online 2024 Mar 11. doi: 10.1038/s41588-024-01678-x

PMCID:: PMC11018526

Abstract Article PDF–7.7M

Select item 109177974.

A single-cell atlas of Drosophila trachea reveals glycosylation-mediated Notch signaling in cell fate specification

Yue Li, Tianfeng Lu, Pengzhen Dong, Jian Chen, Qiang Zhao, Yuying Wang, Tianheng Xiao, Honggang Wu, Quanyi Zhao, Hai Huang

Nat Commun. 2024; 15: 2019. Published online 2024 Mar 6. doi: 10.1038/s41467-024-46455-w

PMCID:: PMC10917797

Abstract Article PDF–5.3M

Select item 106711095.

Multiple Roles of dXNP and dADD1—Drosophila Orthologs of ATRX Chromatin Remodeler

Larisa Melnikova, Anton Golovnin

Int J Mol Sci. 2023 Nov; 24(22): 16486. Published online 2023 Nov 18. doi: 10.3390/ijms242216486

PMCID:: PMC10671109

Abstract Article PDF–2.5M

Select item 105904266.

3D chromatin interactions involving Drosophila insulators are infrequent but preferential and arise before TADs and transcription

Olivier Messina, Flavien Raynal, Julian Gurgo, Jean-Bernard Fiche, Vera Pancaldi, Marcelo Nollmann

Nat Commun. 2023; 14: 6678. Published online 2023 Oct 21. doi: 10.1038/s41467-023-42485-y

PMCID:: PMC10590426

Abstract Article PDF–3.6M

Select item 103797757.

Polycomb Recruiters Inside and Outside of the Repressed Domains

Maksim Erokhin, Vladic Mogila, Dmitry Lomaev, Darya Chetverina

Int J Mol Sci. 2023 Jul; 24(14): 11394. Published online 2023 Jul 13. doi: 10.3390/ijms241411394

PMCID:: PMC10379775

Abstract Article PDF–3.2M

Select item 101057368.

Next-generation large-scale binary protein interaction network for Drosophila melanogaster

Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr

Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0

PMCID:: PMC10105736

Abstract Article PDF–3.2M

Select item 99815359.

A large-scale RNAi screen reveals that mitochondrial function is important for meiotic chromosome organization in oocytes

Karen Jule Nieken, Kathryn O’Brien, Alexander McDonnell, Liudmila Zhaunova, Hiroyuki Ohkura

Chromosoma. 2023; 132(1): 1–18. Published online 2023 Jan 17. doi: 10.1007/s00412-023-00784-9

PMCID:: PMC9981535

Abstract Article PDF–3.4M

Select item 993859010.

Proximity labeling reveals a new in vivo network of interactors for the histone demethylase KDM5

Matanel Yheskel, Simone Sidoli, Julie Secombe

Epigenetics Chromatin. 2023; 16: 8. Published online 2023 Feb 18. doi: 10.1186/s13072-023-00481-y

PMCID:: PMC9938590

Abstract Article PDF–4.8M

Select item 989767211.

CTCF, BEAF-32, and CP190 are not required for the establishment of TADs in early Drosophila embryos but have locus-specific roles

Gabriel R. Cavalheiro, Charles Girardot, Rebecca R. Viales, Tim Pollex, T. B. Ngoc Cao, Perrine Lacour, Songjie Feng, Adam Rabinowitz, Eileen E. M. Furlong

Sci Adv. 2023 Feb; 9(5): eade1085. Published online 2023 Feb 3. doi: 10.1126/sciadv.ade1085

PMCID:: PMC9897672

Abstract Article PDF–2.5M

Select item 972467712.

The chromatin factor ROW cooperates with BEAF‐32 in regulating long‐range inducible genes

Neta Herman, Sebastian Kadener, Sagiv Shifman

EMBO Rep. 2022 Dec; 23(12): e54720. Published online 2022 Oct 17. doi: 10.15252/embr.202254720

PMCID:: PMC9724677

Abstract Article PDF–2.3M

Select item 963564513.

The Drosophila BEAF insulator protein interacts with the polybromo subunit of the PBAP chromatin remodeling complex

J Keller McKowen, Satya V S P Avva, Mukesh Maharjan, Fabiana M Duarte, Jacob M Tome, Julius Judd, Jamie L Wood, Sunday Negedu, Yunkai Dong, John T Lis, Craig M Hart

G3 (Bethesda) 2022 Nov; 12(11): jkac223. Published online 2022 Aug 27. doi: 10.1093/g3journal/jkac223

PMCID:: PMC9635645

Abstract Article PDF–1.8M

Select item 910630214.

Essential role of Cp190 in physical and regulatory boundary formation

Anjali Kaushal, Julien Dorier, Bihan Wang, Giriram Mohana, Michael Taschner, Pascal Cousin, Patrice Waridel, Christian Iseli, Anastasiia Semenova, Simon Restrepo, Nicolas Guex, Erez Lieberman Aiden, Maria Cristina Gambetta

Sci Adv. 2022 May; 8(19): eabl8834. Published online 2022 May 13. doi: 10.1126/sciadv.abl8834

PMCID:: PMC9106302

Abstract Article PDF–8.3M

Select item 899735915.

The role of insulators and transcription in 3D chromatin organization of flies

Keerthi T. Chathoth, Liudmila A. Mikheeva, Gilles Crevel, Jareth C. Wolfe, Ioni Hunter, Saskia Beckett-Doyle, Sue Cotterill, Hongsheng Dai, Andrew Harrison, Nicolae Radu Zabet

Genome Res. 2022 Apr; 32(4): 682–698. doi: 10.1101/gr.275809.121

PMCID:: PMC8997359

Abstract Article PDF–13M

Select item 893100216.

Maintenance of mitochondrial integrity in midbrain dopaminergic neurons governed by a conserved developmental transcription factor

Federico Miozzo, Eva P. Valencia-Alarcón, Luca Stickley, Michaëla Majcin Dorcikova, Francesco Petrelli, Damla Tas, Nicolas Loncle, Irina Nikonenko, Peter Bou Dib, Emi Nagoshi

Nat Commun. 2022; 13: 1426. Published online 2022 Mar 17. doi: 10.1038/s41467-022-29075-0

PMCID:: PMC8931002

Abstract Article PDF–6.9M

Select item 889619517.

In situ nuclear matrix preparation in Drosophila melanogaster embryos/tissues and its use in studying the components of nuclear architecture

Rashmi U Pathak, Ashish Bihani, Rahul Sureka, Parul Varma, Rakesh K Mishra

Nucleus. 2022; 13(1): 116–128. Published online 2022 Mar 3. doi: 10.1080/19491034.2022.2043608

PMCID:: PMC8896195

Abstract Article PDF–3.1M

Select item 866448618.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 857404219.

An explainable artificial intelligence approach for decoding the enhancer histone modifications code and identification of novel enhancers in Drosophila

Jareth C. Wolfe, Liudmila A. Mikheeva, Hani Hagras, Nicolae Radu Zabet

Genome Biol. 2021; 22: 308. Published online 2021 Nov 8. doi: 10.1186/s13059-021-02532-7

PMCID:: PMC8574042

Abstract Article PDF–2.4M

Select item 853553520.

Modulation of Global Gene Expression by Aneuploidy and CNV of Dosage Sensitive Regulatory Genes

Shuai Zhang, Ruixue Wang, Cheng Huang, Ludan Zhang, Lin Sun

Genes (Basel) 2021 Oct; 12(10): 1606. Published online 2021 Oct 12. doi: 10.3390/genes12101606

PMCID:: PMC8535535

Abstract Article PDF–3.6M

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