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Select item 109176601.

Genetic determinants of micronucleus formation in vivo

D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus

Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0

PMCID:: PMC10917660

Abstract Article PDF–4.8M

Select item 103596202.

Polycomb protein SCML2 mediates paternal epigenetic inheritance through sperm chromatin

Akihiko Sakashita, Masatoshi Ooga, Kai Otsuka, So Maezawa, Chikara Takeuchi, Sayaka Wakayama, Teruhiko Wakayama, Satoshi H Namekawa

Nucleic Acids Res. 2023 Jul 21; 51(13): 6668–6683. Published online 2023 Jun 7. doi: 10.1093/nar/gkad479

PMCID:: PMC10359620

Abstract Article PDF–4.1M

Select item 86905963.

Super-enhancer switching drives a burst in gene expression at the mitosis-to-meiosis transition

So Maezawa, Akihiko Sakashita, Masashi Yukawa, Xiaoting Chen, Kazuki Takahashi, Kris G. Alavattam, Ippo Nakata, Matthew T. Weirauch, Artem Barski, Satoshi H. Namekawa

Nat Struct Mol Biol. Author manuscript; available in PMC 2021 Dec 21.

Published in final edited form as: Nat Struct Mol Biol. 2020 Oct; 27(10): 978–988. Published online 2020 Sep 7. doi: 10.1038/s41594-020-0488-3

PMCID:: PMC8690596

Abstract Article PDF–5.7M

Select item 82822414.

Single‐cell RNA‐Seq reveals a highly coordinated transcriptional program in mouse germ cells during primordial follicle formation

Yuanlin He, Qiuzhen Chen, Juncheng Dai, Yiqiang Cui, Chi Zhang, Xidong Wen, Jiazhao Li, Yue Xiao, Xiaoxu Peng, Mingxi Liu, Bin Shen, Jiahao Sha, Zhibin Hu, Jing Li, Wenjie Shu

Aging Cell. 2021 Jul; 20(7): e13424. Published online 2021 Jun 26. doi: 10.1111/acel.13424

PMCID:: PMC8282241

Abstract Article PDF–3.6M

Select item 72006975.

Allelic variants between mouse substrains BALB/cJ and BALB/cByJ influence mononuclear cardiomyocyte composition and cardiomyocyte nuclear ploidy

Peiheng Gan, Michaela Patterson, Hirofumi Watanabe, Kristy Wang, Reilly A. Edmonds, Laura G. Reinholdt, Henry M. Sucov

Sci Rep. 2020; 10: 7605. Published online 2020 May 5. doi: 10.1038/s41598-020-64621-0

PMCID:: PMC7200697

Abstract Article PDF–2.6M

Select item 63788626.

A rapidly evolved domain, the SCML2 DNA-binding repeats, contributes to chromatin binding of mouse SCML2

So Maezawa, Kris G Alavattam, Mayu Tatara, Rika Nagai, Artem Barski, Satoshi H Namekawa

Biol Reprod. 2019 Feb; 100(2): 409–419. Published online 2018 Aug 18. doi: 10.1093/biolre/ioy181

PMCID:: PMC6378862

Abstract Article PDF–1.1M

Select item 61403227.

SCML2 promotes heterochromatin organization in late spermatogenesis

So Maezawa, Kazuteru Hasegawa, Kris G. Alavattam, Mayuka Funakoshi, Taiga Sato, Artem Barski, Satoshi H. Namekawa

J Cell Sci. 2018 Sep 1; 131(17): jcs217125. Published online 2018 Sep 3. doi: 10.1242/jcs.217125

PMCID:: PMC6140322

Abstract Article

Select item 59490128.

Polycomb protein SCML2 facilitates H3K27me3 to establish bivalent domains in the male germline

So Maezawa, Kazuteru Hasegawa, Masashi Yukawa, Naoki Kubo, Akihiko Sakashita, Kris G. Alavattam, Ho-Su Sin, Andrey V. Kartashov, Hiroyuki Sasaki, Artem Barski, Satoshi H. Namekawa

Proc Natl Acad Sci U S A. 2018 May 8; 115(19): 4957–4962. Published online 2018 Apr 23. doi: 10.1073/pnas.1804512115

PMCID:: PMC5949012

Abstract Article PDF–1.4M

Select item 58342019.

RNF8 and SCML2 cooperate to regulate ubiquitination and H3K27 acetylation for escape gene activation on the sex chromosomes

Shannel R. Adams, So Maezawa, Kris G. Alavattam, Hironori Abe, Akihiko Sakashita, Megan Shroder, Tyler J. Broering, Julie Sroga Rios, Michael A. Thomas, Xinhua Lin, Carolyn M. Price, Artem Barski, Paul R. Andreassen, Satoshi H. Namekawa

PLoS Genet. 2018 Feb; 14(2): e1007233. Published online 2018 Feb 20. doi: 10.1371/journal.pgen.1007233

PMCID:: PMC5834201

Abstract Article PDF–41M

Select item 577847310.

Dynamic reorganization of open chromatin underlies diverse transcriptomes during spermatogenesis

So Maezawa, Masashi Yukawa, Kris G Alavattam, Artem Barski, Satoshi H Namekawa

Nucleic Acids Res. 2018 Jan 25; 46(2): 593–608. Published online 2017 Nov 6. doi: 10.1093/nar/gkx1052

PMCID:: PMC5778473

Abstract Article PDF–2.5M

Select item 472954311.

Maternal DNA Methylation Regulates Early Trophoblast Development

Miguel R. Branco, Michelle King, Vicente Perez-Garcia, Aaron B. Bogutz, Matthew Caley, Elena Fineberg, Louis Lefebvre, Simon J. Cook, Wendy Dean, Myriam Hemberger, Wolf Reik

Dev Cell. 2016 Jan 25; 36(2): 152–163. doi: 10.1016/j.devcel.2015.12.027

PMCID:: PMC4729543

Abstract Article PDF–2.8M

Select item 439127912.

SCML2 Establishes the Male Germline Epigenome through Regulation of Histone H2A Ubiquitination

Kazuteru Hasegawa, Ho-Su Sin, So Maezawa, Tyler J. Broering, Andrey V. Kartashov, Kris G. Alavattam, Yosuke Ichijima, Fan Zhang, W. Clark Bacon, Kenneth D. Greis, Paul R. Andreassen, Artem Barski, Satoshi H. Namekawa

Dev Cell. Author manuscript; available in PMC 2016 Mar 9.

Published in final edited form as: Dev Cell. 2015 Mar 9; 32(5): 574–588. Published online 2015 Feb 19. doi: 10.1016/j.devcel.2015.01.014

PMCID:: PMC4391279

Abstract Article PDF–6.6M

Select item 431059813.

Polycomb Protein SCML2 Associates with USP7 and Counteracts Histone H2A Ubiquitination in the XY Chromatin during Male Meiosis

Mengcheng Luo, Jian Zhou, N. Adrian Leu, Carla M. Abreu, Jianle Wang, Montserrat C. Anguera, Dirk G. de Rooij, Maria Jasin, P. Jeremy Wang

PLoS Genet. 2015 Jan; 11(1): e1004954. Published online 2015 Jan 29. doi: 10.1371/journal.pgen.1004954

PMCID:: PMC4310598

Abstract Article PDF–4.9M

Select item 357241014.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 317805915.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253416.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 141356817.

BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System

Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran

PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086

PMCID:: PMC1413568

Article PDF–99K

Select item 31111918.

Construction of Long-Transcript Enriched cDNA Libraries from Submicrogram Amounts of Total RNAs by a Universal PCR Amplification Method

Yulan Piao, Naomi T. Ko, Meng K. Lim, Minoru S.H. Ko

Genome Res. 2001 Sep; 11(9): 1553–1558. doi: 10.1101/gr.185501

PMCID:: PMC311119

Abstract Article PDF–743K

Select item 31099219.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098020.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

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