PMC Links for GEO Profiles (Select 19992145) - PMC

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Items: 19

Select item 90186041.

Disruption of miR-18a alters proliferation, photoreceptor replacement kinetics, inflammatory signaling and microglia/macrophage numbers during retinal regeneration in zebrafish

Evin Magner, Pamela Sandoval-Sanchez, Ashley C. Kramer, Ryan Thummel, Peter F. Hitchcock, Scott M. Taylor

Mol Neurobiol. Author manuscript; available in PMC 2023 May 1.

Published in final edited form as: Mol Neurobiol. 2022 May; 59(5): 2910–2931. Published online 2022 Mar 4. doi: 10.1007/s12035-022-02783-w

PMCID:: PMC9018604

Abstract Article PDF–6.7M

Select item 74036602.

Stimulation of glycolysis promotes cardiomyocyte proliferation after injury in adult zebrafish

Ryuichi Fukuda, Rubén Marín‐Juez, Hadil El‐Sammak, Arica Beisaw, Radhan Ramadass, Carsten Kuenne, Stefan Guenther, Anne Konzer, Aditya M Bhagwat, Johannes Graumann, Didier YR Stainier

EMBO Rep. 2020 Aug 5; 21(8): e49752. Published online 2020 Jul 9. doi: 10.15252/embr.201949752

PMCID:: PMC7403660

Abstract Article PDF–5.2M

Select item 73174893.

Inflammation and matrix metalloproteinase 9 (Mmp‐9) regulate photoreceptor regeneration in adult zebrafish

Nicholas J. Silva, Mikiko Nagashima, Jingling Li, Laura Kakuk‐Atkins, Milad Ashrafzadeh, David R. Hyde, Peter F. Hitchcock

Glia. 2020 Jul; 68(7): 1445–1465. Published online 2020 Feb 8. doi: 10.1002/glia.23792

PMCID:: PMC7317489

Abstract Article PDF–18M

Select item 70021404.

Midkine-a Is Required for Cell Cycle Progression of Müller Glia during Neuronal Regeneration in the Vertebrate Retina

Mikiko Nagashima, Travis S. D'Cruz, Antoinette E. Danku, Doneen Hesse, Christopher Sifuentes, Pamela A. Raymond, Peter F. Hitchcock

J Neurosci. 2020 Feb 5; 40(6): 1232–1247. doi: 10.1523/JNEUROSCI.1675-19.2019

PMCID:: PMC7002140

Abstract Article PDF–12M

Select item 57564985.

Characterization of the Pleiotropic Roles of Sonic Hedgehog during Retinal Regeneration in Adult Zebrafish

Jennifer L. Thomas, Gregory W. Morgan, Kaylee M. Dolinski, Ryan Thummel

Exp Eye Res. Author manuscript; available in PMC 2019 Jan 1.

Published in final edited form as: Exp Eye Res. 2018 Jan; 166: 106–115. Published online 2017 Oct 10. doi: 10.1016/j.exer.2017.10.003

PMCID:: PMC5756498

Abstract Article PDF–1.3M

Select item 53428266.

Lipid droplet biology and evolution illuminated by the characterization of a novel perilipin in teleost fish

James G Granneman, Vickie A Kimler, Huamei Zhang, Xiangqun Ye, Xixia Luo, John H Postlethwait, Ryan Thummel

eLife. 2017; 6: e21771. Published online 2017 Feb 28. doi: 10.7554/eLife.21771

PMCID:: PMC5342826

Abstract Article PDF–6.1M

Select item 53379747.

Evolution of complexity in the zebrafish synapse proteome

Àlex Bayés, Mark O. Collins, Rita Reig-Viader, Gemma Gou, David Goulding, Abril Izquierdo, Jyoti S. Choudhary, Richard D. Emes, Seth G. N. Grant

Nat Commun. 2017; 8: 14613. Published online 2017 Mar 2. doi: 10.1038/ncomms14613

PMCID:: PMC5337974

Abstract Article PDF–2.0M

Select item 50561088.

Fast revascularization of the injured area is essential to support zebrafish heart regeneration

Rubén Marín-Juez, Michele Marass, Sebastien Gauvrit, Andrea Rossi, Shih-Lei Lai, Stefan C. Materna, Brian L. Black, Didier Y. R. Stainier

Proc Natl Acad Sci U S A. 2016 Oct 4; 113(40): 11237–11242. Published online 2016 Sep 19. doi: 10.1073/pnas.1605431113

PMCID:: PMC5056108

Abstract Article PDF–2.3M

Select item 50547289.

Rapid, Dynamic Activation of Müller Glial Stem Cell Responses in Zebrafish

Christopher J. Sifuentes, Jung-Woong Kim, Anand Swaroop, Pamela A. Raymond

Invest Ophthalmol Vis Sci. 2016 Oct; 57(13): 5148–5160. doi: 10.1167/iovs.16-19973

PMCID:: PMC5054728

Abstract Article PDF–3.1M

Select item 463413710.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549

PMCID:: PMC4634137

Abstract Article PDF–5.5M

Select item 461938611.

Dichlorvos exposure results in large scale disruption of energy metabolism in the liver of the zebrafish, Danio rerio

Tri M. Bui-Nguyen, Christine E. Baer, John A. Lewis, Dongren Yang, Pamela J. Lein, David A. Jackson

BMC Genomics. 2015; 16: 853. Published online 2015 Oct 24. doi: 10.1186/s12864-015-1941-2

PMCID:: PMC4619386

Abstract Article PDF–2.6M

Select item 430598512.

Robustness analysis on interspecies interaction network for iron and glucose competition between Candida albicans and zebrafish during infection

Che Lin, Chin-Nan Lin, Yu-Chao Wang, Fang-Yu Liu, Yu-Wen Chien, Yung-Jen Chuang, Chung-Yu Lan, Wen-Ping Hsieh, Bor-Sen Chen

BMC Syst Biol. 2014; 8(Suppl 5): S6. Published online 2014 Dec 12. doi: 10.1186/1752-0509-8-S5-S6

PMCID:: PMC4305985

Abstract Article PDF–2.5M

Select item 412798113.

Retinal Regeneration in Adult Zebrafish Requires Regulation of TGFβ Signaling

Jenny R. Lenkowski, Zhao Qin, Christopher J. Sifuentes, Ryan Thummel, Celina M. Soto, Cecilia B. Moens, Pamela A. Raymond

Glia. Author manuscript; available in PMC 2014 Aug 11.

Published in final edited form as: Glia. 2013 Oct; 61(10): 1687–1697. Published online 2013 Aug 5. doi: 10.1002/glia.22549

PMCID:: PMC4127981

Abstract Article PDF–3.1M

Select item 389744114.

Patterning the Cone Mosaic Array in Zebrafish Retina Requires Specification of Ultraviolet-Sensitive Cones

Pamela A. Raymond, Steven M. Colvin, Zahera Jabeen, Mikiko Nagashima, Linda K. Barthel, Jeremy Hadidjojo, Lilia Popova, Vivek R. Pejaver, David K. Lubensky

PLoS One. 2014; 9(1): e85325. Published online 2014 Jan 21. doi: 10.1371/journal.pone.0085325

PMCID:: PMC3897441

Abstract Article PDF–9.5M

Select item 334227515.

Transcriptional Enhancers in Protein-Coding Exons of Vertebrate Developmental Genes

Deborah I. Ritter, Zhiqiang Dong, Su Guo, Jeffrey H. Chuang

PLoS One. 2012; 7(5): e35202. Published online 2012 May 2. doi: 10.1371/journal.pone.0035202

PMCID:: PMC3342275

Abstract Article PDF–2.1M

Select item 317805916.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 269507317.

Genetic evidence for shared mechanisms of epimorphic regeneration in zebrafish

Zhao Qin, Linda K. Barthel, Pamela A. Raymond

Proc Natl Acad Sci U S A. 2009 Jun 9; 106(23): 9310–9315. Published online 2009 May 27. doi: 10.1073/pnas.0811186106

PMCID:: PMC2695073

Abstract Article PDF–1.8M

Select item 195072618.

The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish

Marco Ferg, Remo Sanges, Jochen Gehrig, Janos Kiss, Matthias Bauer, Agnes Lovas, Monika Szabo, Lixin Yang, Uwe Straehle, Michael J Pankratz, Ferenc Olasz, Elia Stupka, Ferenc Müller

EMBO J. 2007 Sep 5; 26(17): 3945–3956. Published online 2007 Aug 16. doi: 10.1038/sj.emboj.7601821